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The map label for this gene is yhjC [H]

Identifier: 15889748

GI number: 15889748

Start: 2446709

End: 2447608

Strand: Reverse

Name: yhjC [H]

Synonym: Atu2480

Alternate gene names: 15889748

Gene position: 2447608-2446709 (Counterclockwise)

Preceding gene: 159185235

Following gene: 159185229

Centisome position: 86.14

GC content: 59.78

Gene sequence:

>900_bases
ATGGATCAGCTCTCCGCCATGCGGGTTTTTACGCGGGTCGTGGAAACCGGCAATTTCAGCCGCGCCGCCACCGCGCTGAA
CATGCCCAAAACCACGGTTACCAATATGGTGCAGGCGCTCGAGGCGCATTTGCAGACCACGCTTCTCAACCGCACCACGC
GGCGGGTGATGCTGACGACGGACGGTGCTCTCTATTATGAGCGGGCATCACAGATTTTATCGGAAATCGAAGAGTTGGAC
GGCAGTATGTCCAGCGCGCAAGTGCAGCCATCCGGCCGGTTGCGGGTGGAAATGGCCGGTGTCTTCGCGGACCTGGTGGT
TATCCCACATCTTTGCGAATTTTACCAGCGCTATCCGCAAATCCGTCTCGATCTCGGCGTCGGCGACCGTCTGGTCGACT
ATATCGCGGAGAATGTCGACTGTGCGCTGCGCGTGGGCGTGCTGCGCGATCAGTCGCTGATTGCCCGTAAAGTCGGCGAG
CTGCGGTTCGAGACATTCGCCTCGCCATCCTACATCGAAAATTTCGGCATGCCGCGCGAGCCGGAGGATCTGGAGAAGGA
ACACTATTCGGTGGGTTACCTCAATGCCACCACCGGCCAGATCATGCCGGCCTCCTTCGACAATGGCGTGCGCAGCGTCG
AGCTGACCCCGAATTACGTCGTCTCGGTGAATGACAGCCGCACCTATCTCAATGCGGCGCTGGCCGGCATGGGCATCGTG
CAGCTTCCCGTCTTCATGGTAAGGGATGCGCTTTCGCGCGGTGAACTGGTGCCGGTGCTTTCGGAGTGGCGGCGCGAAGC
CATGCCGATCTATGTGGTTTATCCGCAGACCCGGCATGTGACCAACAAGGTGCGCGTTTTTGTCGACTGGCTGGCGAAGC
TGGTTCACGGTCTGGTGTGA

Upstream 100 bases:

>100_bases
AAATCTGAAATCCATATTATTGTTCGGATCGAAACGATCAAGCATGCAAATTTGAAAACACTATTCCGAAATAACGGATA
ATAATATCTCGAGGCAGTGA

Downstream 100 bases:

>100_bases
GGCAGGCGGCGAATGCTCGTGGCAGGGCATGAGCCACAGCCGCCGCAAATTGCTTTCTATCTGGAAACTGGAGCGGGCGA
AGGGATTTGAACCCTCGACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTTDGALYYERASQILSEIEELD
GSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIARKVGE
LRFETFASPSYIENFGMPREPEDLEKEHYSVGYLNATTGQIMPASFDNGVRSVELTPNYVVSVNDSRTYLNAALAGMGIV
QLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWLAKLVHGLV

Sequences:

>Translated_299_residues
MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTTDGALYYERASQILSEIEELD
GSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIARKVGE
LRFETFASPSYIENFGMPREPEDLEKEHYSVGYLNATTGQIMPASFDNGVRSVELTPNYVVSVNDSRTYLNAALAGMGIV
QLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWLAKLVHGLV
>Mature_299_residues
MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTTDGALYYERASQILSEIEELD
GSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIARKVGE
LRFETFASPSYIENFGMPREPEDLEKEHYSVGYLNATTGQIMPASFDNGVRSVELTPNYVVSVNDSRTYLNAALAGMGIV
QLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWLAKLVHGLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=40.5405405405405, Blast_Score=220, Evalue=7e-59,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=33.2191780821918, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=31.6326530612245, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=26.9896193771626, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=29.020979020979, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=26.1168384879725, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.8724832214765, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=23.972602739726, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=24.3055555555556, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=21.3793103448276, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=258, Percent_Identity=26.7441860465116, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=26.1111111111111, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33610; Mature: 33610

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTT
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ
CCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
IRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIARKVGELRFETFASPSYIENFGMPRE
EEEECCCCHHHHHHHHCCCCCEEEECHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PEDLEKEHYSVGYLNATTGQIMPASFDNGVRSVELTPNYVVSVNDSRTYLNAALAGMGIV
CHHHHHHHCEEEEEECCCCCEECCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHCCHH
QLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWLAKLVHGLV
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTT
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ
CCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
IRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIARKVGELRFETFASPSYIENFGMPRE
EEEECCCCHHHHHHHHCCCCCEEEECHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PEDLEKEHYSVGYLNATTGQIMPASFDNGVRSVELTPNYVVSVNDSRTYLNAALAGMGIV
CHHHHHHHCEEEEEECCCCCEECCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHCCHH
QLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWLAKLVHGLV
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]