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The map label for this gene is chvE

Identifier: 15889625

GI number: 15889625

Start: 2325655

End: 2326719

Strand: Reverse

Name: chvE

Synonym: Atu2348

Alternate gene names: 15889625

Gene position: 2326719-2325655 (Counterclockwise)

Preceding gene: 15889628

Following gene: 159185166

Centisome position: 81.88

GC content: 56.62

Gene sequence:

>1065_bases
ATGAAGTCCATTATTTCGCTGATGGCAGCTTGTGCCATCGGTGCTGCGTCCTTCGCAGCGCCGGCTTTCGCACAGGACAA
GGGTTCTGTCGGTATCGCGATGCCGACCAAGTCGTCCGCACGCTGGATCGACGACGGCAACAACATCGTGAAGCAGCTGC
AGGAAGCCGGTTACAAGACCGACCTGCAATATGCTGACGACGATATTCCGAACCAGCTGTCCCAGATCGAAAACATGGTC
ACCAAGGGCGTCAAGGTCCTCGTGATCGCGTCGATCGACGGCACGACGCTGTCGGACGTTCTGAAGCAGGCCGGCGAGCA
GGGCATCAAGGTCATCGCTTATGACCGCCTCATCCGCAACAGCGGCGACGTCAGCTACTACGCAACCTTCGACAACTTCC
AGGTTGGCGTTCTGCAGGCAACTTCGATCACCGACAAGCTCGGCCTGAAGGATGGCAAGGGTCCGTTCAACATCGAACTC
TTCGGCGGTTCGCCGGATGATAACAACGCCTTCTTCTTCTATGATGGCGCGATGTCGGTTCTGAAGCCTTACATCGACAG
CGGCAAGCTGGTCGTGAAGTCCGGTCAGATGGGAATGGACAAGGTCGGCACGCTGCGTTGGGATCCGGCAACGGCCCAGG
CTCGTATGGATAACCTCCTGTCGGCTTATTACACCGACGCCAAGGTTGACGCCGTTCTGTCGCCTTACGATGGTCTTTCC
ATCGGCATCATCTCCTCGCTGAAGGGCGTTGGTTATGGCACGAAGGACCAGCCGCTGCCGGTCGTTTCCGGTCAGGACGC
TGAAGTTCCTTCCGTCAAGTCGATCATTGCCGGCGAGCAGTACTCCACCATCTTCAAGGACACCCGCGAACTCGCCAAGG
TGACCGTGAACATGGTCAACGCTGTCATGGAAGGCAAGGAACCGGAAGTGAACGACACCAAGACCTATGAAAATGGTGTC
AAGGTTGTTCCGTCCTACCTGCTGAAGCCGGTTGCAGTGACCAAGGAGAACTACAAGCAGGTTCTCGTTGACGGCGGTTA
CTACAAGGAAGACCAGCTGAAATAA

Upstream 100 bases:

>100_bases
AATGGAGCAAGCGCAGGGCGGCTCCTTACTTGTGACGGCATGAATTTCATGGTGCACCGCAGCATGCGGGCTCCAGAGAA
GGGCTCAAGGGAGAGAGTTA

Downstream 100 bases:

>100_bases
GCTGAAGACACATGCGGGGATGGCTTGGCGTCATCCCCGTTTTTCCATAAAAATAAAAACGTCTGAATTAATCGGGCGCT
GGATTGCGATATGGCCAATA

Product: sugar binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMV
TKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIEL
FGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS
IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGV
KVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK

Sequences:

>Translated_354_residues
MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMV
TKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIEL
FGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS
IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGV
KVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK
>Mature_354_residues
MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMV
TKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIEL
FGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS
IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGV
KVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK

Specific function: Required for effective transcriptional induction of the vir genes by monosaccharides in response to plant signals and for normal growth and chemotaxis towards certain sugars. Function as a periplasmic multiple sugar-binding receptor protein. It does not i

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family

Homologues:

Organism=Escherichia coli, GI1789990, Length=324, Percent_Identity=40.1234567901235, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1788473, Length=339, Percent_Identity=25.3687315634218, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): CHVE_AGRT5 (P25548)

Other databases:

- EMBL:   D17457
- EMBL:   M30318
- EMBL:   AE007869
- PIR:   A43654
- PIR:   AC2865
- PIR:   B97642
- RefSeq:   NP_355306.1
- ProteinModelPortal:   P25548
- STRING:   P25548
- GeneID:   1134386
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu2348
- eggNOG:   COG4213
- HOGENOM:   HBG531827
- OMA:   VGIAMPT
- PhylomeDB:   P25548
- ProtClustDB:   CLSK800544
- BioCyc:   ATUM176299-1:ATU2348-MONOMER
- GO:   GO:0006935
- InterPro:   IPR001761

Pfam domain/function: PF00532 Peripla_BP_1

EC number: NA

Molecular weight: Translated: 38130; Mature: 38130

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKT
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCHHHHHHHHHCCCCC
DLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRN
CCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHC
SGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSV
CCCEEEEEEECCEEEEEEEECCHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHH
LKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS
HHHHHCCCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHEEECCCCCCC
IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVN
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AVMEGKEPEVNDTKTYENGVKVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK
HHHCCCCCCCCCCCCHHCCHHHHHHHHHCCHHCCHHCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKT
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCHHHHHHHHHCCCCC
DLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRN
CCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHC
SGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSV
CCCEEEEEEECCEEEEEEEECCHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHH
LKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLS
HHHHHCCCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHEEECCCCCCC
IGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMVN
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AVMEGKEPEVNDTKTYENGVKVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK
HHHCCCCCCCCCCCCHHCCHHHHHHHHHCCHHCCHHCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8253785; 2156804; 11743193; 11743194