Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is gda [H]
Identifier: 15889592
GI number: 15889592
Start: 2293053
End: 2294363
Strand: Direct
Name: gda [H]
Synonym: Atu2315
Alternate gene names: 15889592
Gene position: 2293053-2294363 (Clockwise)
Preceding gene: 159185155
Following gene: 159185156
Centisome position: 80.7
GC content: 59.88
Gene sequence:
>1311_bases ATGAGCATGGTTCTGCTGCGTGGCCGCCTGCTGAGCTTCCGCCGCGCGCCGCTCTCGATCGACGATACGCAAAGCTATCT TTATATCGAAGACGGCGGCCTGCTTCTCGAAAACGGCAGGATTGCCGCCATCGGCGAATACGCCGATATTCGCGAGACAG CGCCGGAGGACGTCGAGGAAAAGGACCACCGCCCGCATCTCATCGTGCCCGGCCTCATCGACATGCACCTGCATTTCCCG CAGATGCAGGTCATCGGCTCCTATGCCGCCAATCTCTTGGAATGGTTGAACACCTATACGTTTCCGGAAGAATGCCGCTT CGTCGAAAGCGCCCATGCCCAGCGCATCGCCACGCATTTTTACGACGAGCTGCTGCGCCACGGCACCACCACGGCCGCTG CCTATTGCTCCGTGCACAAAACCTCCGCCGACGCCTTTTTTACTGAGGCCATGAAGCGCAACATGCTGATGATCGGCGGC AAGGTGATGATGGACCGCAACGCTCCGCAGGGCCTGCTGGACACGCCGGAAACCTCCTATGACGAGACGCGTCAGGTGAT TGCCGACTGGCACGGCAGGGGCCGCAACCACGTCGCCATCACCCCCCGCTTCGCCATCACCTCCACGCCGAAGCAGATGG AAGCCGCCCAGGCGCTGGCGCAGGAATTTCCCGATCTCTTCATCCAGACGCATCTTTCCGAAAATCTGGACGAGATCAAA TATACCTGCGAACTCTATCCCGAAGCGACTGACTATACCGATATCTATGTGCGTTACGGCCTGATGGGCAACAAGACCCT GCTCGGTCACGCCATCCACCTCTCCGATCGCGAAGCGGACGTACTGTCGGAAACCGGCGCGGTCGCCGTACATTGCCCCA CTTCCAACCTCTTCATCGGCTCCGGCCTGTTCCCGATGAAAAAGCTGCAACGACGTGAAAAGCCTGTTCGTATCGCAGTC GCGACCGATATTGGCGGCGGATCGAGCTATTCCATGCTGCGCACCATGGATGAGGCCTACAAGATCCAGCAATTGCTGGG CGAACGCCTCAACCCGCTGGAAAGCTGGTATCTGATGACCCGCGGCAATGCCGAAGCGCTTTCGATGGTTGACCGCATCG GCACGCTGGAGGCAGGCACGGACGCCGACATCACGGTGCTCAATGCCTCCTCGACGCCGGCCATGGCGCTGAAGATGGAA GTCGTGAAAAGCCTGACGGAAGAACTGTTCCTGATGCTGACCATGGGCGACGACCGCACGGTGGTGGAGACCTATGTGGC CGGCAGGGCGATGAAGAGCGTGCTGGCATAG
Upstream 100 bases:
>100_bases CCGGCAACATCACCGCCATCACCCCGGATGAGCGCAAGGTGCTGACCGCCTGGTACGAAAGCGCGGTTTCCGGGGCCGGA AAAGCCGAAGGAAAGACTGA
Downstream 100 bases:
>100_bases TTCGGCTGGGGCCGAAACATAAGGTCACGATCTCGCTTAAACCAATATCCATGGAGTGAGCGGATGCCGCTTGTTTCTTC TCCCCGCCGGGGAGAAGAAC
Product: guanine deaminase
Products: NA
Alternate protein names: Guanase; Guanine aminase; Guanine aminohydrolase; GAH [H]
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSMVLLRGRLLSFRRAPLSIDDTQSYLYIEDGGLLLENGRIAAIGEYADIRETAPEDVEEKDHRPHLIVPGLIDMHLHFP QMQVIGSYAANLLEWLNTYTFPEECRFVESAHAQRIATHFYDELLRHGTTTAAAYCSVHKTSADAFFTEAMKRNMLMIGG KVMMDRNAPQGLLDTPETSYDETRQVIADWHGRGRNHVAITPRFAITSTPKQMEAAQALAQEFPDLFIQTHLSENLDEIK YTCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSDREADVLSETGAVAVHCPTSNLFIGSGLFPMKKLQRREKPVRIAV ATDIGGGSSYSMLRTMDEAYKIQQLLGERLNPLESWYLMTRGNAEALSMVDRIGTLEAGTDADITVLNASSTPAMALKME VVKSLTEELFLMLTMGDDRTVVETYVAGRAMKSVLA
Sequences:
>Translated_436_residues MSMVLLRGRLLSFRRAPLSIDDTQSYLYIEDGGLLLENGRIAAIGEYADIRETAPEDVEEKDHRPHLIVPGLIDMHLHFP QMQVIGSYAANLLEWLNTYTFPEECRFVESAHAQRIATHFYDELLRHGTTTAAAYCSVHKTSADAFFTEAMKRNMLMIGG KVMMDRNAPQGLLDTPETSYDETRQVIADWHGRGRNHVAITPRFAITSTPKQMEAAQALAQEFPDLFIQTHLSENLDEIK YTCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSDREADVLSETGAVAVHCPTSNLFIGSGLFPMKKLQRREKPVRIAV ATDIGGGSSYSMLRTMDEAYKIQQLLGERLNPLESWYLMTRGNAEALSMVDRIGTLEAGTDADITVLNASSTPAMALKME VVKSLTEELFLMLTMGDDRTVVETYVAGRAMKSVLA >Mature_435_residues SMVLLRGRLLSFRRAPLSIDDTQSYLYIEDGGLLLENGRIAAIGEYADIRETAPEDVEEKDHRPHLIVPGLIDMHLHFPQ MQVIGSYAANLLEWLNTYTFPEECRFVESAHAQRIATHFYDELLRHGTTTAAAYCSVHKTSADAFFTEAMKRNMLMIGGK VMMDRNAPQGLLDTPETSYDETRQVIADWHGRGRNHVAITPRFAITSTPKQMEAAQALAQEFPDLFIQTHLSENLDEIKY TCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSDREADVLSETGAVAVHCPTSNLFIGSGLFPMKKLQRREKPVRIAVA TDIGGGSSYSMLRTMDEAYKIQQLLGERLNPLESWYLMTRGNAEALSMVDRIGTLEAGTDADITVLNASSTPAMALKMEV VKSLTEELFLMLTMGDDRTVVETYVAGRAMKSVLA
Specific function: Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia [H]
COG id: COG0402
COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATZ/TRZ family [H]
Homologues:
Organism=Homo sapiens, GI4758426, Length=391, Percent_Identity=33.2480818414322, Blast_Score=198, Evalue=7e-51, Organism=Escherichia coli, GI1789249, Length=425, Percent_Identity=45.1764705882353, Blast_Score=402, Evalue=1e-113, Organism=Saccharomyces cerevisiae, GI6319963, Length=359, Percent_Identity=30.9192200557103, Blast_Score=179, Evalue=9e-46, Organism=Drosophila melanogaster, GI24643849, Length=444, Percent_Identity=31.7567567567568, Blast_Score=195, Evalue=6e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR014311 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.4.3 [H]
Molecular weight: Translated: 48727; Mature: 48596
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00146 BETA_LACTAMASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMVLLRGRLLSFRRAPLSIDDTQSYLYIEDGGLLLENGRIAAIGEYADIRETAPEDVEE CCEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCEEEEECCHHHHHHCCCCCHHH KDHRPHLIVPGLIDMHLHFPQMQVIGSYAANLLEWLNTYTFPEECRFVESAHAQRIATHF HCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH YDELLRHGTTTAAAYCSVHKTSADAFFTEAMKRNMLMIGGKVMMDRNAPQGLLDTPETSY HHHHHHCCCCHHHHHHEEECCCHHHHHHHHHHCCEEEECCEEEECCCCCCCCCCCCCCCH DETRQVIADWHGRGRNHVAITPRFAITSTPKQMEAAQALAQEFPDLFIQTHLSENLDEIK HHHHHHHHHHCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE YTCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSDREADVLSETGAVAVHCPTSNLFIG EEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCHHHHHCCCCEEEECCCCCEEEC SGLFPMKKLQRREKPVRIAVATDIGGGSSYSMLRTMDEAYKIQQLLGERLNPLESWYLMT CCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEE RGNAEALSMVDRIGTLEAGTDADITVLNASSTPAMALKMEVVKSLTEELFLMLTMGDDRT CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCH VVETYVAGRAMKSVLA HHHHHHHHHHHHHHCC >Mature Secondary Structure SMVLLRGRLLSFRRAPLSIDDTQSYLYIEDGGLLLENGRIAAIGEYADIRETAPEDVEE CEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCEEEEECCHHHHHHCCCCCHHH KDHRPHLIVPGLIDMHLHFPQMQVIGSYAANLLEWLNTYTFPEECRFVESAHAQRIATHF HCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH YDELLRHGTTTAAAYCSVHKTSADAFFTEAMKRNMLMIGGKVMMDRNAPQGLLDTPETSY HHHHHHCCCCHHHHHHEEECCCHHHHHHHHHHCCEEEECCEEEECCCCCCCCCCCCCCCH DETRQVIADWHGRGRNHVAITPRFAITSTPKQMEAAQALAQEFPDLFIQTHLSENLDEIK HHHHHHHHHHCCCCCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE YTCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSDREADVLSETGAVAVHCPTSNLFIG EEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCHHHHHCCCCEEEECCCCCEEEC SGLFPMKKLQRREKPVRIAVATDIGGGSSYSMLRTMDEAYKIQQLLGERLNPLESWYLMT CCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEE RGNAEALSMVDRIGTLEAGTDADITVLNASSTPAMALKMEVVKSLTEELFLMLTMGDDRT CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCH VVETYVAGRAMKSVLA HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 10913105 [H]