Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889528
Identifier: 15889528
GI number: 15889528
Start: 2223491
End: 2224120
Strand: Reverse
Name: 15889528
Synonym: Atu2252
Alternate gene names: NA
Gene position: 2224120-2223491 (Counterclockwise)
Preceding gene: 15889534
Following gene: 15889527
Centisome position: 78.27
GC content: 61.75
Gene sequence:
>630_bases ATGGCAGCGGAGACGATAAATTCGGCTGATGATGCGGCAGGGCTTGCGGCGATGATTTCCCGTGCTGCCGAACAGACCGG TGACGCCAAGCGCGGACCGGCTCCGGTCGAGCGCTGGAATCCGCCTTTTTGCGGCGATCTCGACATGGAAATCCGGGCCG ATGGCACCTGGTTCTATCTCGGCACCCCCATCGGCAGGGCACCGCTGGTGCGGCTGTTTTCCACGGTTCTGCGCAAGGAT GAGGATGGGAAAACCTATCTCGTAACTCCTGTGGAAAAAGTCGGCATCCGCGTGGTGGATGCGCCGTTCGTGGCGGTGGA GATGAAGGCGACTGCGGGGGAGGAGGACGGCGAGCCTTTGCTCACCTTTCGCACCAATGTCGGCGATGTGGTGGAGGCGG GACCGGAGCATCCGCTGCGCTTCGAGATTTTCGGTGAGAACCGCGAATTGAAGCCCTATATTCTGGTGCGCGGGCGGCTG GAAGCGCTCGTCTCTCGGGCCGTGATGTATGATCTCGTGGCACTTGGCGAGGTGGTCGCCGTGGATGGGGTTGAGATGTT CGCGGTGCGCTCGGGCGGGGTGATCTTTCCAGTGATGCCGGCCAAGGAACTGGAACGGCTTTCGCAATGA
Upstream 100 bases:
>100_bases CGCTGCATATAGCTTATTGCTCTCTTGGCCGCTGACAAGCGCCATTCGAATGACTATGTCGTGACTTAGTATTTCCTTAT CGGCAAAGCGAGACTCGAAT
Downstream 100 bases:
>100_bases CAATGACGACACTCAAAGGTTTTACCGCCAGCGATTTCCGCCGCCGGGTGCTGCAGGAAGGTGAGGGCGTGGCCGAGCGG GAAAATGGCGACCATGTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MAAETINSADDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFCGDLDMEIRADGTWFYLGTPIGRAPLVRLFSTVLRKD EDGKTYLVTPVEKVGIRVVDAPFVAVEMKATAGEEDGEPLLTFRTNVGDVVEAGPEHPLRFEIFGENRELKPYILVRGRL EALVSRAVMYDLVALGEVVAVDGVEMFAVRSGGVIFPVMPAKELERLSQ
Sequences:
>Translated_209_residues MAAETINSADDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFCGDLDMEIRADGTWFYLGTPIGRAPLVRLFSTVLRKD EDGKTYLVTPVEKVGIRVVDAPFVAVEMKATAGEEDGEPLLTFRTNVGDVVEAGPEHPLRFEIFGENRELKPYILVRGRL EALVSRAVMYDLVALGEVVAVDGVEMFAVRSGGVIFPVMPAKELERLSQ >Mature_208_residues AAETINSADDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFCGDLDMEIRADGTWFYLGTPIGRAPLVRLFSTVLRKDE DGKTYLVTPVEKVGIRVVDAPFVAVEMKATAGEEDGEPLLTFRTNVGDVVEAGPEHPLRFEIFGENRELKPYILVRGRLE ALVSRAVMYDLVALGEVVAVDGVEMFAVRSGGVIFPVMPAKELERLSQ
Specific function: Unknown
COG id: COG3816
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22718; Mature: 22587
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAETINSADDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFCGDLDMEIRADGTWFYL CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEE GTPIGRAPLVRLFSTVLRKDEDGKTYLVTPVEKVGIRVVDAPFVAVEMKATAGEEDGEPL CCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCEEEEECCEEEEEEEECCCCCCCCEE LTFRTNVGDVVEAGPEHPLRFEIFGENRELKPYILVRGRLEALVSRAVMYDLVALGEVVA EEEECCCCHHHHCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHEEE VDGVEMFAVRSGGVIFPVMPAKELERLSQ ECCEEEEEEECCCEEEEECCHHHHHHHCC >Mature Secondary Structure AAETINSADDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFCGDLDMEIRADGTWFYL CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEE GTPIGRAPLVRLFSTVLRKDEDGKTYLVTPVEKVGIRVVDAPFVAVEMKATAGEEDGEPL CCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCEEEEECCEEEEEEEECCCCCCCCEE LTFRTNVGDVVEAGPEHPLRFEIFGENRELKPYILVRGRLEALVSRAVMYDLVALGEVVA EEEECCCCHHHHCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHEEE VDGVEMFAVRSGGVIFPVMPAKELERLSQ ECCEEEEEEECCCEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA