Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is icc [C]
Identifier: 15889519
GI number: 15889519
Start: 2216099
End: 2216974
Strand: Reverse
Name: icc [C]
Synonym: Atu2243
Alternate gene names: 15889519
Gene position: 2216974-2216099 (Counterclockwise)
Preceding gene: 159185121
Following gene: 159185119
Centisome position: 78.02
GC content: 60.39
Gene sequence:
>876_bases ATGTCCGACCGGGTGAATTTCGTCCATCTGACCGATCTGCATATCGGCAATCCGCAGGTGCAGGATGATGATCTTTATTC CGAGACCTCGGCCACGCTGTCAGCCACGCTCGCGCAGGTAAAGGCGCTGGTGCCGCCACCGGAATTCATCGTCGTCAGCG GTGACCTGACCAACCGGGGCGATGCCGGCAGCTATGAGGAACTCAAGCGGCTGATGGCTGAGGCGGAACTGGATGCGCCT GTGCTTTTCGCGCTCGGTAATCATGACCGTCGCGACGGGTTTTACCCTGTCATGCTCGACCGTCATGAGGGCGTGGACGA GCCGTATGACCATGCCGAGGTGATTGCCGGTATCCACATCATCGTCATGGACACCAGCGTTCCGGGCAAAGTCGGTGGCG CTTTCGAACCCGGCCAGATCGAATGGCTGGAGGAAGAACTCGAAAATCATCCTGAACTGCCGAAGCTGCTGGTGATGCAC CATGCGCCGGCGCTGGATTTCGACCGTCCCGAGGCGGAATGGGAATCCCTGTCGTTTGACGATACCGAGGCTCTGGACGA GCTGTTGTTCGAACATGATGTCATCGGCATTCTGGCGGGTCATATCCATTGTGACCGTATGTCGCACTGGCAGGGCATTC CGGTGGTGGTCGGCATCGGCCAGCATTTCGCCACCGATCCGCTGTGGTTGCATGAGGGCGTGCGCATGTTGTCCGGTGCA TCCTTCGCCATCGGCACGATTAGGGACACCGGCCTCACCGTCACCTTCGCGCCGCAGCCCAGCGATCGCCGGGAACTGAA GCGTCACACGCAGGCCGGCATGGCCGAGCTGATCACGGACTATGAGAGTGGTCAGGCGCAGGACGCAGCCGAATAG
Upstream 100 bases:
>100_bases CCCAATAACCAACCTATCGTCAGAGAAATCAAAAGGTCCGGGAGTGTCCGAGGGCGGTTTCGGATGGGATTTCTGTGCCT AGCAAAACGGGAAAAAAGCC
Downstream 100 bases:
>100_bases GACAGAGCATCACGGCAGTCGACGGGCGGAAACCTTTGCGGGTAATACGCCCCTTTGCGCTACCGGACACAATCTTGAGT TTTCGCGCGCATCGGTATCT
Product: hypothetical protein
Products: NA
Alternate protein names: 3 5'-Cyclic-Nucleotide Phosphodiesterase; Phosphoesterase; Ser/Thr Protein Phosphatase Family Protein; Icc Protein; CAMP Phosphodiesterase
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSDRVNFVHLTDLHIGNPQVQDDDLYSETSATLSATLAQVKALVPPPEFIVVSGDLTNRGDAGSYEELKRLMAEAELDAP VLFALGNHDRRDGFYPVMLDRHEGVDEPYDHAEVIAGIHIIVMDTSVPGKVGGAFEPGQIEWLEEELENHPELPKLLVMH HAPALDFDRPEAEWESLSFDDTEALDELLFEHDVIGILAGHIHCDRMSHWQGIPVVVGIGQHFATDPLWLHEGVRMLSGA SFAIGTIRDTGLTVTFAPQPSDRRELKRHTQAGMAELITDYESGQAQDAAE
Sequences:
>Translated_291_residues MSDRVNFVHLTDLHIGNPQVQDDDLYSETSATLSATLAQVKALVPPPEFIVVSGDLTNRGDAGSYEELKRLMAEAELDAP VLFALGNHDRRDGFYPVMLDRHEGVDEPYDHAEVIAGIHIIVMDTSVPGKVGGAFEPGQIEWLEEELENHPELPKLLVMH HAPALDFDRPEAEWESLSFDDTEALDELLFEHDVIGILAGHIHCDRMSHWQGIPVVVGIGQHFATDPLWLHEGVRMLSGA SFAIGTIRDTGLTVTFAPQPSDRRELKRHTQAGMAELITDYESGQAQDAAE >Mature_290_residues SDRVNFVHLTDLHIGNPQVQDDDLYSETSATLSATLAQVKALVPPPEFIVVSGDLTNRGDAGSYEELKRLMAEAELDAPV LFALGNHDRRDGFYPVMLDRHEGVDEPYDHAEVIAGIHIIVMDTSVPGKVGGAFEPGQIEWLEEELENHPELPKLLVMHH APALDFDRPEAEWESLSFDDTEALDELLFEHDVIGILAGHIHCDRMSHWQGIPVVVGIGQHFATDPLWLHEGVRMLSGAS FAIGTIRDTGLTVTFAPQPSDRRELKRHTQAGMAELITDYESGQAQDAAE
Specific function: Affects The Expression Of The Lacz Gene. [C]
COG id: COG1409
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32166; Mature: 32035
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRVNFVHLTDLHIGNPQVQDDDLYSETSATLSATLAQVKALVPPPEFIVVSGDLTNRG CCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC DAGSYEELKRLMAEAELDAPVLFALGNHDRRDGFYPVMLDRHEGVDEPYDHAEVIAGIHI CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCEEE IVMDTSVPGKVGGAFEPGQIEWLEEELENHPELPKLLVMHHAPALDFDRPEAEWESLSFD EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCC DTEALDELLFEHDVIGILAGHIHCDRMSHWQGIPVVVGIGQHFATDPLWLHEGVRMLSGA CHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCEEEECCCHHCCCCHHHHHHHHHHCCC SFAIGTIRDTGLTVTFAPQPSDRRELKRHTQAGMAELITDYESGQAQDAAE CEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SDRVNFVHLTDLHIGNPQVQDDDLYSETSATLSATLAQVKALVPPPEFIVVSGDLTNRG CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC DAGSYEELKRLMAEAELDAPVLFALGNHDRRDGFYPVMLDRHEGVDEPYDHAEVIAGIHI CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCEEE IVMDTSVPGKVGGAFEPGQIEWLEEELENHPELPKLLVMHHAPALDFDRPEAEWESLSFD EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCC DTEALDELLFEHDVIGILAGHIHCDRMSHWQGIPVVVGIGQHFATDPLWLHEGVRMLSGA CHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCEEEECCCHHCCCCHHHHHHHHHHCCC SFAIGTIRDTGLTVTFAPQPSDRRELKRHTQAGMAELITDYESGQAQDAAE CEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA