Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889495
Identifier: 15889495
GI number: 15889495
Start: 2187518
End: 2188363
Strand: Reverse
Name: 15889495
Synonym: Atu8174
Alternate gene names: NA
Gene position: 2188363-2187518 (Counterclockwise)
Preceding gene: 159185104
Following gene: 159185440
Centisome position: 77.01
GC content: 61.58
Gene sequence:
>846_bases ATGGACAATGATCTCTCCCATATGCGGATCACCATCTGGGTAACGCTTGTGGCACTCGCGCTCGTCATCCTGTTTGCAAC CTTCCCCTCCATCGATCTGCGGTTTTCCGCCCTGTTTTTTTCGTCGACGGGCCAGCCATGGCCCGGCCGGGAGCCGTTTC CCGAATGGCTGCGCGACACGCTGCGCGAAGGTGCGGAGCTTGCCACGCTTCTGGCTTTCCTGGTCCTCGTCGGCAATCTC AGGCTGGGCGCTTTGCAGCGAACCGGCTGGCGGGTCTGGGCGTTCCTGTGTGGGCCGGTAATCCTCTGTGCCGGCCTTCT CGTCAATGGCGTGCTGAAGGCCATGATCGGTCGCGCGCGTCCGTTCAGCGTCACCGAATTTGGTGGGCATCAGCTGTTTA CGCCACCTTTTCAGTTCAGCACGCAATGTTATTCGAACTGTTCGTTTTCTTCGGGCGAAACCGCGCTGATCGCGAGCTTT TTCCTGCCACTCTGCGTGCTGGTCTGGCCGCGCCTGCGTCCCCTGGGGCAATGGATGGTGGGTGTTCTTGCTGCCGGGGC AATCATCCTCATGTCCGGTCTTCGCATCGCAGCCGGCGGGCATTTCCTCAGCGATGTGGTGATGTCCATCCTGTTTTCCG CCCTGACGACGCTGTTTCTGTACAGGGTACTGGCGATAAGCCGACACCGTCACCTCTTCACCGGTGATGCCGTCTCGGCC GATACGATCAGCCTTTGGCGCAATGGTCGCCATGCCGTCCTTGCCCGTGTTCGGCGCTGGTGGCCGAAAATCAAGGCGGC AGCTTCTCGCCTGCGGCCGCCCGGCGCGGGTGCGGCCTCGTCCTAA
Upstream 100 bases:
>100_bases GAGGCGCCGGTTGCGCATTGGACCGCCGGGCCGGGCTTTTTGGAGGGCCGGGAAATCGGGCTCTGGCGCCTGCCGCCGCA ATGCATTCCGGGGGGCGCTC
Downstream 100 bases:
>100_bases GAGGACGTTTGAAGTGCGGCATCAATGAGATGAATGGCGACGCTCGCCAGATAGTCCACGTCATCCCCGGACTTGTCTCG AGGATCTGCAACATATTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphoesterase PA-Phosphatase Related Protein; PAP2 Superfamily Protein; PA-Phosphatase Related Phosphoesterase; PAP2 Family Protein; Membrane-Associated Phospholipid Phosphatase; Superfamily Protein; NADHUbiquinone Oxidoreductase F Subunit
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDTLREGAELATLLAFLVLVGNL RLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRARPFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASF FLPLCVLVWPRLRPLGQWMVGVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS
Sequences:
>Translated_281_residues MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDTLREGAELATLLAFLVLVGNL RLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRARPFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASF FLPLCVLVWPRLRPLGQWMVGVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS >Mature_281_residues MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDTLREGAELATLLAFLVLVGNL RLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRARPFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASF FLPLCVLVWPRLRPLGQWMVGVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30897; Mature: 30897
Theoretical pI: Translated: 11.58; Mature: 11.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCCCCCCCCHHHHHHH LREGAELATLLAFLVLVGNLRLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRAR HHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASFFLPLCVLVWPRLRPLGQWMV CCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCH DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MDNDLSHMRITIWVTLVALALVILFATFPSIDLRFSALFFSSTGQPWPGREPFPEWLRDT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCCCCCCCCHHHHHHH LREGAELATLLAFLVLVGNLRLGALQRTGWRVWAFLCGPVILCAGLLVNGVLKAMIGRAR HHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PFSVTEFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASFFLPLCVLVWPRLRPLGQWMV CCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLAAGAIILMSGLRIAAGGHFLSDVVMSILFSALTTLFLYRVLAISRHRHLFTGDAVSA HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCH DTISLWRNGRHAVLARVRRWWPKIKAAASRLRPPGAGAASS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA