| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is bphP [H]
Identifier: 15889444
GI number: 15889444
Start: 2130798
End: 2133350
Strand: Direct
Name: bphP [H]
Synonym: Atu2165
Alternate gene names: 15889444
Gene position: 2130798-2133350 (Clockwise)
Preceding gene: 15889441
Following gene: 159185084
Centisome position: 74.99
GC content: 60.01
Gene sequence:
>2553_bases ATGGCATCCACGGACTATCATGTCGACCTGACCAATTGCGACCGCGAACCCATTCATATTCCAGGCTATATTCAACCGCA TGGCTGCCTCATCGCCTGCGATAACGCCATGCGAATGGTGCTGCGGCATTCCGAAAACTGCGGCGAACTGCTGGGACTTG AGGGCGATCTCAACGGCAGGACCGCCGAGGATGTGCTCGGCAAAAAGCTCGTCCACGATCTCCGCAACGCGCTCACCGTC ACCGGTAGAACCACGCGCCCCGCCATGCTGCCCGCAATGGAAACAAGCGACGGCCGCAGCTTCGATATTTCACTCCATCG CTACAAATCCACCACCATCATCGAATTCGAGCCCTCGGGCAGCGACGCGCAGCCGCTCGGCACGGCGCGCAAGATGGTGG ACCGCATCCGCGAAGCCGACAGCGTCGAAAGCCTGATCTCCAGAACCACACGCCTGGTAAAGGCGACGCTGGGTTACGAC CGGGTGATGATCTACCGCTTCCAGGAAGACGGCGCCGGCAAGGTCGTGTCGGAGGCCAAGCAGCCCGAGCTGGAGAGCTT TCTCGGGCAATATTTCCCCGCCAGCGATATTCCACAGCAGGCTCGCGCACTTTATCTCAAGAACACCTTGCGCATCATCT CCGATGCCAGCGGCACCCGCATTCCGGTCCTGCCAGCCGTCGATGTCTCCGGTGAGCCGCTCGATCTCTCTTACGCGCAT TTGCGCAGCGTCTCGCCCATCCATTGCGAATATCTCCGCAATATGGGTGTTGCCGCCTCCATGTCGATTTCTGTGATTGT CGATGGCGCCCTGTGGGGCCTGATCGCCTGCCACCATTATTCGCCGCGTGTGCTGAGCATGCCAGTTCGGATCGCTGCGG AAATGTTCGGGGAATTTTTCTCCATGCATCTGCAGGTTCTGAAGCAGAAGCGCCGCCTCGACACCATCAACCACGCCCAT GCGGCGCTCGACCGGTTTCTGCGGCTGGCCGCCCATCACGCCAACATTGAAGAACTGCTGGTCGACAGTTTTCAGGATTT TGCCGATCTGATGCCCTGCGACGGTGTCGGGCTGTGGGTCGGCAACAACTGGCACGGCCATGGCGCAACGCCACCGCATG ATGCCATTCCAAGGCTGGCGCGTTTCGTCGCTTCGGCTTCGGAAGGCAGGGTCTGGGCAACACACGCCCTGTCGCAGGCC ATACCGGAAGCGGAAATATACGCCGGCACCGCGGCCGGAATGCTTGCTATCCCGCTTTCGCAGGTCAAGAGCGACTATCT CCTGTTTTTCCGCAAGGAGATCGTGCAGAACCTGAACTGGGCCGGCAATCCGGAAAAATCCTATGAAACCGGCCCGATGG GCGACCGCCTCACGCCGCGTAAAAGCTTCGCAATCTGGAAAGAGACCGTTCGCCTGCAGGCACAGCCCTGGTCGGAAGCC GACCGGGAAATCGCCGAAGCCGCGAGAATCGCGCTTGTCGAAGTGGCGTTCCACCACAGCGAGTTGATGGCAGGCGAAAG AGAGCGCGCCGAGGTGCGCCAGCGCATGCTAAACGAGGAGCTTAATCACCGCGTCAAGAATGTTCTCGCCATCATCAAAT CGCTGGTCGGCAATCCCTCGCAGGAGGGCAAGACCCTGCAGGAGTATGTCACCGCGCTGAAGGGCCGCATCCAGGCGCTG TCCTTTGCCCATGACCAGATCATTCGCGGCGAAGGCGGCGGCGCGCTGCGCGATCTGCTGGAGGCCGAATTGTCGCCCCA TCGTTCGCCGGAAACGACGGTGAAGCTCGAAGGACCCCAGATCACACTCGATTCCCGCGCCTTTTCGGTGATGGCGCTGG TTCTGCACGAACTGGCGACGAATGCCGCCAAATATGGTGCGCTCTCGCAAAATGGCGGGCAATTGCATGTGCGCTGGGAC GTTAACGAGAATCGCGATTGCGAAATATCATGGCGCGAGACCCTGCTGACCACTCTGCCGGCCCCATCGCGCGCCGGTTT CGGCACGGCGCTCATCAGCCGCAGCATTCCCTACGATCTCGGCGGGCGCAGCACGATACGGTATTTGCCGAATGGGCTGG AGGCAGAGATTCTCCTGCCGTTCCGCCATGTATCATCGGTCTCAGCGGCGTTCGAGACAAAAACCGAGGCGGAAACCCTG CCGCAACCCAGACGTTACAATCGGGAGGAGCCATTGAAAGTATTGCTCGTCGAAGACCAGATGCTGATCGCCATGGATGT CGAGAACATGCTGGAAGATAATGGCATCAAGGCAATCGAAACCGCGACCTCGTCGGCCATGGCGATTGAAAAGCTGAAAA CCTATCTGCCTGACGTCGCCATTCTCGACATCAATCTTGGTTCCGACACCTCCATCCCCGTCGCCCGCGAACTGCACCGC CGCGGCATCCCGTTCCTCTTCGCCACCGGTTATGCGGATGGCAGCATGGTGCCGGATGAATTTGGCGCCGTGCCGGTTAT CCGAAAACCCTATGACGAGGATGCGCTGATGGCTGGGATTGGGGTGTTGGTGGGGGATACGGAGCGGGTTTGA
Upstream 100 bases:
>100_bases AAGAACGGGGAAGGGCAGACCTTTAAGAATGATCGACTTTGGCTTCCCCTTTATTCGGCAAACGGCATTTCTTCATGCAC TGGGTGCGAAAGACTGATTC
Downstream 100 bases:
>100_bases GCGTAGCCTCCCCTCATCCCTGTGCTTGTAACAGGAATGAGGTAGAGGCGCGCGCAGACCAATGATCCGCTATCGCCCCG TGAAACCGCGCTTCGTTGCT
Product: bacteriophytochrome protein
Products: NA
Alternate protein names: Phytochrome-like protein [H]
Number of amino acids: Translated: 850; Mature: 849
Protein sequence:
>850_residues MASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGRTAEDVLGKKLVHDLRNALTV TGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSGSDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYD RVMIYRFQEDGAGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAH LRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFFSMHLQVLKQKRRLDTINHAH AALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQA IPEAEIYAGTAAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEA DREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYVTALKGRIQAL SFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWD VNENRDCEISWRETLLTTLPAPSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETL PQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVAILDINLGSDTSIPVARELHR RGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGIGVLVGDTERV
Sequences:
>Translated_850_residues MASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGRTAEDVLGKKLVHDLRNALTV TGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSGSDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYD RVMIYRFQEDGAGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAH LRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFFSMHLQVLKQKRRLDTINHAH AALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQA IPEAEIYAGTAAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEA DREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYVTALKGRIQAL SFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWD VNENRDCEISWRETLLTTLPAPSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETL PQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVAILDINLGSDTSIPVARELHR RGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGIGVLVGDTERV >Mature_849_residues ASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGRTAEDVLGKKLVHDLRNALTVT GRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSGSDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYDR VMIYRFQEDGAGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAHL RSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFFSMHLQVLKQKRRLDTINHAHA ALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAI PEAEIYAGTAAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEAD REIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYVTALKGRIQALS FAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWDV NENRDCEISWRETLLTTLPAPSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETLP QPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVAILDINLGSDTSIPVARELHRR GIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGIGVLVGDTERV
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93952; Mature: 93821
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGR CCCCCEEEEECCCCCCCEECCCEECCCCCEEEECHHHHHHHHCCCCCHHHCCCCCCCCCC TAEDVLGKKLVHDLRNALTVTGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSG CHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCEEEEEEEEECCEEEEEECCCC SDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYDRVMIYRFQEDGAGKVVSEAK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCC QPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAH CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHH LRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFF HCCCCCHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH SMHLQVLKQKRRLDTINHAHAALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEE GNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAIPEAEIYAGTAAGMLAIPLS CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHEECCCCCCHHHHHHH QVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHH DREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QEGKTLQEYVTALKGRIQALSFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQ CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCE ITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWDVNENRDCEISWRETLLTTLP EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHCC APSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETL CCCCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHCCHHHHHC PQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVA CCCCCCCCCCCEEEEEECCCEEEEECHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEE ILDINLGSDTSIPVARELHRRGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGI EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH GVLVGDTERV HEEECCCCCC >Mature Secondary Structure ASTDYHVDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGR CCCCEEEEECCCCCCCEECCCEECCCCCEEEECHHHHHHHHCCCCCHHHCCCCCCCCCC TAEDVLGKKLVHDLRNALTVTGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSG CHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCCCEEEEEEEEECCEEEEEECCCC SDAQPLGTARKMVDRIREADSVESLISRTTRLVKATLGYDRVMIYRFQEDGAGKVVSEAK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCC QPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGEPLDLSYAH CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHH LRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMFGEFF HCCCCCHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH SMHLQVLKQKRRLDTINHAHAALDRFLRLAAHHANIEELLVDSFQDFADLMPCDGVGLWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEE GNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAIPEAEIYAGTAAGMLAIPLS CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHEECCCCCCHHHHHHH QVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETVRLQAQPWSEA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHH DREIAEAARIALVEVAFHHSELMAGERERAEVRQRMLNEELNHRVKNVLAIIKSLVGNPS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QEGKTLQEYVTALKGRIQALSFAHDQIIRGEGGGALRDLLEAELSPHRSPETTVKLEGPQ CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCE ITLDSRAFSVMALVLHELATNAAKYGALSQNGGQLHVRWDVNENRDCEISWRETLLTTLP EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHCC APSRAGFGTALISRSIPYDLGGRSTIRYLPNGLEAEILLPFRHVSSVSAAFETKTEAETL CCCCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHCCHHHHHC PQPRRYNREEPLKVLLVEDQMLIAMDVENMLEDNGIKAIETATSSAMAIEKLKTYLPDVA CCCCCCCCCCCEEEEEECCCEEEEECHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEE ILDINLGSDTSIPVARELHRRGIPFLFATGYADGSMVPDEFGAVPVIRKPYDEDALMAGI EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH GVLVGDTERV HEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]