Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889410
Identifier: 15889410
GI number: 15889410
Start: 2095377
End: 2096141
Strand: Direct
Name: 15889410
Synonym: Atu2129
Alternate gene names: NA
Gene position: 2095377-2096141 (Clockwise)
Preceding gene: 159185062
Following gene: 159185065
Centisome position: 73.74
GC content: 63.27
Gene sequence:
>765_bases ATGCTGGACGTTGCCCCTCCCGTCATCACCCCACGAGGTACAAAGATCGAACCCTCCGCCGGTGCGCCTTTCGAGGCTGT GCGCGTGGCCCGGGATGTGCTGCACACTTCCCGCACGGCAGCACTTGCGACCCTCGATCCCGTCAGCGGTTATCCCTATA CAACCGCCACCAATATCGGCATCGAGCCTGATGGCACGCCGTTCTTCTTTGCAGCGGGGCTGACGCTGCACGCCCGTAAC ATGGAGACGGACGCGCGCATCTCGGTGACACTCGCTCCCTTCGGCAAGGGTGACGCGCTGACGCTGCCGCGCCTGACACT GGTGGGCAGGGCTGACCGAATCGGCCCGGATGAAGTGCCGCTCGCCATCGCGCGCTACATTGCCCGCTACCCCAAAGCGA AACTTTATCTCTCCCTTCCCGACACAAGGCTTTACCGGCTGCGGACGGAAGGCGTGCAGATCAATGGCGGCCCGGCCCGC AATGCCAGCAACATCACCCCGGCCGACCTGCGCACCGATCTCTCAGGTGCGGAGGAACTGATGGCGGCGGCTGAAAGCGA AGCGACCCGCCTCAACGCCATCAAGGGCGAGGCGTCGCGGCTCGCAGTTCTCGCTGGTGCCAAAACCGGACGCTGGAAAA TCACATCCATCGATCCTGACGGCATCGATCTCGCTTCGGCCAGCGATCTGGCGCGGCTCTGGTTTGCGGAGCGGGTAGAA ACCTTGAAGCAGTTTGAGAAGGCGCTCGCTCAGCTTTTGAAGTGA
Upstream 100 bases:
>100_bases GTCGCGTTAAATCGATCGGTTGCAAATGCTCGGGACAGGCCCGAGCATGACGTGGAGAGGTTTTACGCTTCTCTCAGCAT CCACTAACTCAGGATAAGAC
Downstream 100 bases:
>100_bases AGGGCTCAAGCGATTCACAACCCTGAGACAATCGCTCTCCTCCGTCATACTCGGGCCTGTCCCGAGCATCTGCTACCTAT CAATTTGCGATAGGTGATTG
Product: hypothetical protein
Products: NA
Alternate protein names: Pyridoxamine Oxidase Protein; Pyridoxamine 5-Phosphate Oxidase-Like Protein
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARN METDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR NASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVE TLKQFEKALAQLLK
Sequences:
>Translated_254_residues MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARN METDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR NASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVE TLKQFEKALAQLLK >Mature_254_residues MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARN METDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR NASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVE TLKQFEKALAQLLK
Specific function: Unknown
COG id: COG0748
COG function: function code P; Putative heme iron utilization protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27217; Mature: 27217
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCEEEECC IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVP CCCCCCEEEEEECEEEEECCCCCCCEEEEEEECCCCCCCEECCCEEEECCCCCCCCCHHH LAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEEL HHHHHHHHHCCCCEEEEECCCCEEEEEEECCEEECCCCCCCCCCCCHHHHHHCCCHHHHH MAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVE HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH TLKQFEKALAQLLK HHHHHHHHHHHHHC >Mature Secondary Structure MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIG CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCEEEECC IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVP CCCCCCEEEEEECEEEEECCCCCCCEEEEEEECCCCCCCEECCCEEEECCCCCCCCCHHH LAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEEL HHHHHHHHHCCCCEEEEECCCCEEEEEEECCEEECCCCCCCCCCCCHHHHHHCCCHHHHH MAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVE HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH TLKQFEKALAQLLK HHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA