Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889336
Identifier: 15889336
GI number: 15889336
Start: 2007792
End: 2008298
Strand: Direct
Name: 15889336
Synonym: Atu8171
Alternate gene names: NA
Gene position: 2007792-2008298 (Clockwise)
Preceding gene: 15889328
Following gene: 159185027
Centisome position: 70.66
GC content: 54.83
Gene sequence:
>507_bases ATGGGGCAGGATCATATCCGTTACGACATTCTCGCACAGGATGCCCTTCGCGGCGTTATTCGTAAGGTTTTGGGTGAAGT GGCCGCTACCGGCCGCCTGCCCGGCGACCATCACTTCTTCATCACCTTCCTGACCGGCGCGCCGGGCGTGCGGATTTCCC AGCACCTCAAGTCGAAATACGCCGAACAGATGACCATCGTCATCCAGCACCAGTTCTGGGATATGAAGGTGACGGAAACC GGATTCGAAATCGGCCTCTCCTTCTCCGATACGCCGGAAAAGCTTGTTATTCCCTACAATGCCATCAGAGGCTTCTACGA TCCTTCCGTCAATTTCGAGCTTGAGTTCGATGTGCCTCTGGCCGAAGAGGAAGAAATGGAAGAAGCGGAAATCACCGCTT ACCCCGTTTCCCACGAGGCGAAGCCCGCTTCCGAAACACCCAAATCGGGTGAGGAAAAGAAGGAAGGCTCCGTCGTTTCG CTGGATGCTTTCCGCAAGAAGCAATAA
Upstream 100 bases:
>100_bases GCTCAAGGATTGCGCGAAGATTCAAAGTGTTACAGCGTCCCGGGCGCGCAAGCCGCGCCACGCATGAAAAGACGTTCGAA TAAGGGAAAGACAGGACCGC
Downstream 100 bases:
>100_bases CGGCTTCTGCCCCAAGCCTTTTGAAACCCAGCCTCGTGAAACTCAAGGAGACATATCCCCATGGCGGCCGATATCGTCAA TCTGCGTCAGTTTCGCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTET GFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAEEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVS LDAFRKKQ
Sequences:
>Translated_168_residues MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTET GFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAEEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVS LDAFRKKQ >Mature_167_residues GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETG FEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAEEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSL DAFRKKQ
Specific function: Unknown
COG id: COG3814
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18900; Mature: 18768
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKY CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH AEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPL HHHEEEEEEEECCCEEEECCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCEEEEECCCC AEEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSLDAFRKKQ CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCEEEECCCCCCC >Mature Secondary Structure GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKY CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH AEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPL HHHEEEEEEEECCCEEEECCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCEEEEECCCC AEEEEMEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSLDAFRKKQ CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA