Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is serB [C]
Identifier: 15889327
GI number: 15889327
Start: 1999092
End: 1999982
Strand: Direct
Name: serB [C]
Synonym: Atu2040
Alternate gene names: 15889327
Gene position: 1999092-1999982 (Clockwise)
Preceding gene: 159185022
Following gene: 15889328
Centisome position: 70.35
GC content: 61.17
Gene sequence:
>891_bases ATGGCTCTGGTTGCCACGCTTATCGCCAATCCGTCAAATCCTGTTCTGACAGCAGCCCTCGGCGAAGCCGCCGCAAAGGC GGTCAATGCATCGGGCCTTTATTGGCTGGCCGACGGCATCGCCTGCGATATAGCCCTGCCCCTGGGCACCGCAGCCGAAC AGGCGCGCAGCGCGATTGCAGCCGCGCTTATCGGAAAACCCATCGATATCGTCATCCAGGAGCAGGACCAGCGGCGCAAG AAGCTGCTGATCGCCGACATGGATTCAACCATGATCGGCCAGGAGTGCATCGACGAGCTGGCCGCCGAAGTCGGGCTGAA GGACAAGGTCTCCGCCATCACCGCCCGTGCGATGAATGGCGAGATCGCTTTTGAGCCGGCGCTGCGTGAGCGCGTCGCAC TGCTGAAGGGCCTGCCGGTCTCTGTCATCGATGACGTCATCGAAAAGCGCATCACGCTGACATCAGGCGGCAAGGAGCTG ATCGCCACCATGAAAGCGAAGGGTTATTACACCGCCCTCGTTTCCGGCGGCTTCACCGTCTTCACCAACCGCGTCGCTGC GATGCTTGGTTTTGATGAGAACCGCGCCAATCTGCTCGGCGAAGCCAATGGCGAGCTTGATGGCACCGTTGCCGAACCCA TCCTCGGCAAACAGGCCAAAGTGGATGCACTGAACGATATTGCCGCAAGGCTCGGCATTTCGTCTGAAGAGGCGATGGCG GTCGGCGATGGCGCCAATGATCTCGGCATGCTGCATGTGGCCGGTGCAGGCGTTGCCCTGCACGCCAAGCCCGCCGTGGC CGCCGAAGCGCAGATGCGCATCGACCATGGCGACCTGACCGCGCTTCTCTACATCCAGGGCTATCGCAAGACGGATTTTG TCATTCCATGA
Upstream 100 bases:
>100_bases GTTCCGCTCCCGCGCCAGACGAAGCGCAAGCGCGGACTTGCCGCTTGCCGTCGGGCCGGTTATCAGGATCGCATCAAAAT TCTGATCAAGGTTTTTCATC
Downstream 100 bases:
>100_bases TCATTCGTGAGACAGAAAGACTCATTCTGCGCGAATGGAAGGAGAGCGACCGCGACCTGTTCCGCGAAATCAACGCGGAT GAGAAGGTCATGGAATTTTT
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MALVATLIANPSNPVLTAALGEAAAKAVNASGLYWLADGIACDIALPLGTAAEQARSAIAAALIGKPIDIVIQEQDQRRK KLLIADMDSTMIGQECIDELAAEVGLKDKVSAITARAMNGEIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKEL IATMKAKGYYTALVSGGFTVFTNRVAAMLGFDENRANLLGEANGELDGTVAEPILGKQAKVDALNDIAARLGISSEEAMA VGDGANDLGMLHVAGAGVALHAKPAVAAEAQMRIDHGDLTALLYIQGYRKTDFVIP
Sequences:
>Translated_296_residues MALVATLIANPSNPVLTAALGEAAAKAVNASGLYWLADGIACDIALPLGTAAEQARSAIAAALIGKPIDIVIQEQDQRRK KLLIADMDSTMIGQECIDELAAEVGLKDKVSAITARAMNGEIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKEL IATMKAKGYYTALVSGGFTVFTNRVAAMLGFDENRANLLGEANGELDGTVAEPILGKQAKVDALNDIAARLGISSEEAMA VGDGANDLGMLHVAGAGVALHAKPAVAAEAQMRIDHGDLTALLYIQGYRKTDFVIP >Mature_295_residues ALVATLIANPSNPVLTAALGEAAAKAVNASGLYWLADGIACDIALPLGTAAEQARSAIAAALIGKPIDIVIQEQDQRRKK LLIADMDSTMIGQECIDELAAEVGLKDKVSAITARAMNGEIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKELI ATMKAKGYYTALVSGGFTVFTNRVAAMLGFDENRANLLGEANGELDGTVAEPILGKQAKVDALNDIAARLGISSEEAMAV GDGANDLGMLHVAGAGVALHAKPAVAAEAQMRIDHGDLTALLYIQGYRKTDFVIP
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=169, Percent_Identity=34.9112426035503, Blast_Score=75, Evalue=9e-14, Organism=Escherichia coli, GI1790849, Length=208, Percent_Identity=39.4230769230769, Blast_Score=136, Evalue=2e-33, Organism=Caenorhabditis elegans, GI115534456, Length=231, Percent_Identity=29.8701298701299, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534454, Length=209, Percent_Identity=29.1866028708134, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534458, Length=211, Percent_Identity=28.9099526066351, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=224, Percent_Identity=38.8392857142857, Blast_Score=156, Evalue=4e-39, Organism=Drosophila melanogaster, GI24661601, Length=233, Percent_Identity=29.6137339055794, Blast_Score=75, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 30816; Mature: 30685
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVATLIANPSNPVLTAALGEAAAKAVNASGLYWLADGIACDIALPLGTAAEQARSAIA CCEEEEECCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCHHHHHHHHHH AALIGKPIDIVIQEQDQRRKKLLIADMDSTMIGQECIDELAAEVGLKDKVSAITARAMNG HHHHCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC EIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKELIATMKAKGYYTALVSGGFTV CEEECHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCEEEEEECCCHHH FTNRVAAMLGFDENRANLLGEANGELDGTVAEPILGKQAKVDALNDIAARLGISSEEAMA HHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEE VGDGANDLGMLHVAGAGVALHAKPAVAAEAQMRIDHGDLTALLYIQGYRKTDFVIP ECCCCCCCEEEEEECCCEEEECCCCHHCHHEEEECCCCEEEEEEEECCCCCCCCCC >Mature Secondary Structure ALVATLIANPSNPVLTAALGEAAAKAVNASGLYWLADGIACDIALPLGTAAEQARSAIA CEEEEECCCCCCCEEEEHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCHHHHHHHHHH AALIGKPIDIVIQEQDQRRKKLLIADMDSTMIGQECIDELAAEVGLKDKVSAITARAMNG HHHHCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC EIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKELIATMKAKGYYTALVSGGFTV CEEECHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCHHHHHHHHCCCEEEEEECCCHHH FTNRVAAMLGFDENRANLLGEANGELDGTVAEPILGKQAKVDALNDIAARLGISSEEAMA HHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEE VGDGANDLGMLHVAGAGVALHAKPAVAAEAQMRIDHGDLTALLYIQGYRKTDFVIP ECCCCCCCEEEEEECCCEEEECCCCHHCHHEEEECCCCEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]