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The map label for this gene is rbsC [H]

Identifier: 15889196

GI number: 15889196

Start: 1876887

End: 1877867

Strand: Reverse

Name: rbsC [H]

Synonym: Atu1900

Alternate gene names: 15889196

Gene position: 1877867-1876887 (Counterclockwise)

Preceding gene: 15889202

Following gene: 159184970

Centisome position: 66.09

GC content: 61.77

Gene sequence:

>981_bases
ATGTCCGCGCTTGAACGCAATGAGGGGGTCACGCACACCAGGAGCCCGCTTGCCTGGCTGAGCGGTGCCACCGGACCACT
TTTGGGCCTGCTGATGCTCTGTGTGTTCCTGACTTTCGCCAGCGAGAATTTCCTGTCGCTGCGAAACGGCCTGAACATCC
TCGACCAGATCACCGTTCTCGGCATCATGGCCGTTGGCATGACCTTCGTCATCCTGCTTGGCGGCATCGATCTGTCTGTC
GGCTCGGTGTTGGCACTGTCGATGATGATCATGGGCTGGACAGCCAATGTCGCGGGCATGCCGATGGGCATGGCGATCGT
GCTCGCGCTTGTCGCGTCCGCAGCCTGCGGCCTTGTGGTCGGTATTCTGGTAACGGCCTTCCGTGTGCCCGCCTTCATTG
CCACACTTGCAATGATGTCGGTTGCGCGCGGCCTTGCAAACATGATCACCGATGGCCAGCAGATCGTCGGCTTTCCTGAC
TGGTTCATGATGCTGGCGATTGAGCGCCATTTCGGCGTGCTGACCGCGACCGTGCTGCTAATGCTGGTCGTGGTGCTGGT
GTCCTGGGCTTTCCTGCGCTTCCGCTCGGAAGGCCGCACCGTCTATGCGGTGGGCGGCAATCCTGAGGTGGCGCGTCTTG
CCGGCATCAACGTGCCGCTGGTGACGATCTGCGTTTATGTCGTCTGCGCGGTTCTGGCCGGTCTGGCGGGCATCGTTCTT
GCCGCACGTCTCGACTCAGTACAGCCCTCCAGCGGTTTCGGCTACGAGCTGGATACGATTGCGGCCGTTGTGATCGGCGG
AACCTCGCTTTCGGGCGGTGCTGGCGGCATCGGCGGAACGCTGATCGGCGTGCTGATCATCGGCGTGCTGCGCAACGGCC
TCAACCTGCTCAACGTCTCTCCCTTTCTTCAGCAGGTCATCATCGGTGTCGTCATCGTGCTGGCTGTGGGTGCTGAAACG
CTGCGCCGTCGCAGAAGCTGA

Upstream 100 bases:

>100_bases
TATTGACAAGCTTCTCAAAACTGGCTTATGCATGTTTCACCGATGATGAATAATTATTCTAATCGGTTTAAAAAATGCAA
GACAGTCATCGGGAGGAGCC

Downstream 100 bases:

>100_bases
ATTTGCCTGCGGACGGGGATGAGCCGTCCGCGCAATAAACGACCCTCCCGATACGGGAGGCGTGAAAAACGACCGGAGGG
GAGGAGGTTCGATCTGCCCG

Product: ABC transporter, membrane spanning protein (ribose)

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSALERNEGVTHTRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVILLGGIDLSV
GSVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVVGILVTAFRVPAFIATLAMMSVARGLANMITDGQQIVGFPD
WFMMLAIERHFGVLTATVLLMLVVVLVSWAFLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVL
AARLDSVQPSSGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGVVIVLAVGAET
LRRRRS

Sequences:

>Translated_326_residues
MSALERNEGVTHTRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVILLGGIDLSV
GSVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVVGILVTAFRVPAFIATLAMMSVARGLANMITDGQQIVGFPD
WFMMLAIERHFGVLTATVLLMLVVVLVSWAFLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVL
AARLDSVQPSSGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGVVIVLAVGAET
LRRRRS
>Mature_325_residues
SALERNEGVTHTRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVILLGGIDLSVG
SVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVVGILVTAFRVPAFIATLAMMSVARGLANMITDGQQIVGFPDW
FMMLAIERHFGVLTATVLLMLVVVLVSWAFLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVLA
ARLDSVQPSSGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGVVIVLAVGAETL
RRRRS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=46.474358974359, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI1788896, Length=302, Percent_Identity=38.0794701986755, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1790524, Length=329, Percent_Identity=34.6504559270517, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082395, Length=281, Percent_Identity=39.8576512455516, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI145693152, Length=282, Percent_Identity=35.8156028368794, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=42.3357664233577, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788471, Length=346, Percent_Identity=32.6589595375723, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787793, Length=275, Percent_Identity=30.9090909090909, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693214, Length=262, Percent_Identity=34.7328244274809, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787794, Length=273, Percent_Identity=30.4029304029304, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33840; Mature: 33709

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALERNEGVTHTRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVL
CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
GIMAVGMTFVILLGGIDLSVGSVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GILVTAFRVPAFIATLAMMSVARGLANMITDGQQIVGFPDWFMMLAIERHFGVLTATVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MLVVVLVSWAFLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVL
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AARLDSVQPSSGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVS
HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PFLQQVIIGVVIVLAVGAETLRRRRS
HHHHHHHHHHHHHHHHCHHHHHHCCC
>Mature Secondary Structure 
SALERNEGVTHTRSPLAWLSGATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVL
CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
GIMAVGMTFVILLGGIDLSVGSVLALSMMIMGWTANVAGMPMGMAIVLALVASAACGLVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GILVTAFRVPAFIATLAMMSVARGLANMITDGQQIVGFPDWFMMLAIERHFGVLTATVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MLVVVLVSWAFLRFRSEGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVL
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AARLDSVQPSSGFGYELDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVS
HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PFLQQVIIGVVIVLAVGAETLRRRRS
HHHHHHHHHHHHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]