Click here to switch to the map view.

The map label for this gene is xynB [H]

Identifier: 15888930

GI number: 15888930

Start: 1601485

End: 1602417

Strand: Direct

Name: xynB [H]

Synonym: Atu1617

Alternate gene names: 15888930

Gene position: 1601485-1602417 (Clockwise)

Preceding gene: 159184840

Following gene: 159184842

Centisome position: 56.36

GC content: 60.66

Gene sequence:

>933_bases
ATGATCTGCCGCCGCAGCCTGCTTCTGGGTGGCGCGCTCCTCGCCACTGTGATGAAAGCCCCGCATCTGCTTGCCGACGG
CGATCGACCCCGATTTTCCCTCTGGCCCGGCCCGCCTCCTGGCGGCCACGGTCCAAGCGGTTCCCAGAACATCAGCAAAA
AAGGCGCTGTCACCAACATCGCCATACCGGGCCTTGAGATGTTTGCACCCATCAGGCCAAACGGGTCTGCAATGCTCATT
GCAGGCGGCGGCGGGTATAAACGCATCGAGGAAGGCAAGGAGTCCTATCCCGCCGCACGCTGGCTTGCCGCCAGAGGCAT
TTGCGCTTTTGTCCTCACCTATCGCCTTCCGACCGAGGGATGGACTGCCGGGCCGCTGGCACCGCTTCAGGACGCACAGC
GCGCATTTCGTCTGATACGTGCACGCAGTTCGGATTGGCAGATCGATTCGCAACGGATAGGCGCACTTGGCTTTTCTGCA
GGCGGCCACTTGATGGGACTGGCAGCGACCCGCCCGGCGTTTGCATCCTACACGGCGGTCGATGACATCGACAGGCAATC
AGCCCGGCCGGATGTCGCAGCCCTGATCTATCCGGTCATCACGCTTGCACCGCCTTATGACCATACGTCCACCCGTAGAT
CGCTTATCGGCGCTCACTCTACAGACGAGGCGACGCGAGAATGGTCAGTGGAAAGCCATGTGAGCAACGATTGCCCGCCG
GTCTTCATCACACAGGCGGATGACGACCGGATTTCCAATCCCGCCAATAGCCTCATCATGCAGCGGGCCTGCGAGAAGGC
GGGGGTGAATGTCGAATTTCATCCAATCGTCTCCGGTGGCCACGGCTTTGGCATGGGCAAGCCCGGAACCGCAACGCAGG
AATGGCCGCAATGGTTTGAAGCATGGCTGCGAAAACACAACTTTCTCGCTTGA

Upstream 100 bases:

>100_bases
ATCGAGATGCACCGGCATTGACCTCATTTGGTGTTTTTACATCTTCCTCATACACTGTTCTTCCGCAGAAAATGCCACGA
CCAAGCACGAGGGTGATATC

Downstream 100 bases:

>100_bases
TGCAACCCGGTAATCCCGATCCCGACAAACCATGATTGCAGGACGGAAAGTCTGTTCGCCAAACAAAAAAGGACCGCAAA
CGCGGCCCTTTTTTGTATCA

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MICRRSLLLGGALLATVMKAPHLLADGDRPRFSLWPGPPPGGHGPSGSQNISKKGAVTNIAIPGLEMFAPIRPNGSAMLI
AGGGGYKRIEEGKESYPAARWLAARGICAFVLTYRLPTEGWTAGPLAPLQDAQRAFRLIRARSSDWQIDSQRIGALGFSA
GGHLMGLAATRPAFASYTAVDDIDRQSARPDVAALIYPVITLAPPYDHTSTRRSLIGAHSTDEATREWSVESHVSNDCPP
VFITQADDDRISNPANSLIMQRACEKAGVNVEFHPIVSGGHGFGMGKPGTATQEWPQWFEAWLRKHNFLA

Sequences:

>Translated_310_residues
MICRRSLLLGGALLATVMKAPHLLADGDRPRFSLWPGPPPGGHGPSGSQNISKKGAVTNIAIPGLEMFAPIRPNGSAMLI
AGGGGYKRIEEGKESYPAARWLAARGICAFVLTYRLPTEGWTAGPLAPLQDAQRAFRLIRARSSDWQIDSQRIGALGFSA
GGHLMGLAATRPAFASYTAVDDIDRQSARPDVAALIYPVITLAPPYDHTSTRRSLIGAHSTDEATREWSVESHVSNDCPP
VFITQADDDRISNPANSLIMQRACEKAGVNVEFHPIVSGGHGFGMGKPGTATQEWPQWFEAWLRKHNFLA
>Mature_310_residues
MICRRSLLLGGALLATVMKAPHLLADGDRPRFSLWPGPPPGGHGPSGSQNISKKGAVTNIAIPGLEMFAPIRPNGSAMLI
AGGGGYKRIEEGKESYPAARWLAARGICAFVLTYRLPTEGWTAGPLAPLQDAQRAFRLIRARSSDWQIDSQRIGALGFSA
GGHLMGLAATRPAFASYTAVDDIDRQSARPDVAALIYPVITLAPPYDHTSTRRSLIGAHSTDEATREWSVESHVSNDCPP
VFITQADDDRISNPANSLIMQRACEKAGVNVEFHPIVSGGHGFGMGKPGTATQEWPQWFEAWLRKHNFLA

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 33385; Mature: 33385

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICRRSLLLGGALLATVMKAPHLLADGDRPRFSLWPGPPPGGHGPSGSQNISKKGAVTNI
CCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEE
AIPGLEMFAPIRPNGSAMLIAGGGGYKRIEEGKESYPAARWLAARGICAFVLTYRLPTEG
ECCCHHHEECCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
WTAGPLAPLQDAQRAFRLIRARSSDWQIDSQRIGALGFSAGGHLMGLAATRPAFASYTAV
CCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHCEEEECCCCCEEEEECCCCCHHHHHHH
DDIDRQSARPDVAALIYPVITLAPPYDHTSTRRSLIGAHSTDEATREWSVESHVSNDCPP
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHCCHHHHCCCCCCC
VFITQADDDRISNPANSLIMQRACEKAGVNVEFHPIVSGGHGFGMGKPGTATQEWPQWFE
EEEECCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
AWLRKHNFLA
HHHHHCCCCC
>Mature Secondary Structure
MICRRSLLLGGALLATVMKAPHLLADGDRPRFSLWPGPPPGGHGPSGSQNISKKGAVTNI
CCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEE
AIPGLEMFAPIRPNGSAMLIAGGGGYKRIEEGKESYPAARWLAARGICAFVLTYRLPTEG
ECCCHHHEECCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
WTAGPLAPLQDAQRAFRLIRARSSDWQIDSQRIGALGFSAGGHLMGLAATRPAFASYTAV
CCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHCEEEECCCCCEEEEECCCCCHHHHHHH
DDIDRQSARPDVAALIYPVITLAPPYDHTSTRRSLIGAHSTDEATREWSVESHVSNDCPP
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHCCHHHHCCCCCCC
VFITQADDDRISNPANSLIMQRACEKAGVNVEFHPIVSGGHGFGMGKPGTATQEWPQWFE
EEEECCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
AWLRKHNFLA
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]