| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is fdhF [H]
Identifier: 15888869
GI number: 15888869
Start: 1538392
End: 1540758
Strand: Direct
Name: fdhF [H]
Synonym: Atu1548
Alternate gene names: 15888869
Gene position: 1538392-1540758 (Clockwise)
Preceding gene: 15888866
Following gene: 15888870
Centisome position: 54.14
GC content: 62.15
Gene sequence:
>2367_bases ATGTTTTTGACAAACGGCAAACGCCGACAGCCAGGCACGAGAAGACAGTTTCCGGGAAAAAGAACCATGAGCAAGACGGA TTTCATAGGCAAGGCGTCGACCGCCGCGGGCGGCTGGGGCGCACTCAAAAGCGTTGGCAAACGCCTGCTGGAATCCGGGG CGCCGATTTCCGGCGCCCGCACCCTTTTGAAGACCAACCAGCCGGACGGGTTCGACTGCCCGGGCTGCGCCTGGGGTGAC CCCGAACACGGTTCCTCCTTCGAGTTCTGCGAAAACGGCGTCAAGGCGGTGTCATGGGAAGCGACGGAGGCACGGGTTCC GCCGGATTTCTTCGCCCGCCACACGGTCTCCGAACTGCGCAGCTGGTCGGACTACGATCTGGAAAAACAGGGCCGCCTCA CCCATCCGATGCGCTATGACCGGGCGAGCGACACATATCTGCCCGTTTCCTGGGACGATGCCTTTGCCGAGATAGGCCGT ATCCTCAATAGCCTCGACAGCCCCGACCGGGCCGAATTCTACACATCCGGCCGCGCCTCCAACGAGGCGGCCTTTCTCTA CCAATTGATGGTGCGGCTTTACGGCACCAATAATTTCCCCGATTGCTCCAACATGTGCCACGAGGCGAGCGGCGTTGGCC TCAATGCATCGATCGGCGTCGGCAAGGGCACGGTGCTGCTCGAGGATTTCGAACAGACGGACGCCATTTTTGTCATCGGG CAAAATCCCGGCACCAACCACCCCCGCATGCTGGGCGACCTGCGCCGCGCCGCCCTTCGCGGTGCCCGTATCGCCGTCTT TAATCCCATCCGGGAAAAGGGTCTGGAACGCTTCGCCGACCCGCAGGACAAGATCGAAATGATCACCGGCAGCAGCACGA AGATCGCCACCAACTATTATCAGCCGCGCCAGGGCGGCGACATGGCGGCGGTGCGCGGCATGAGCAAGGCGGTCTTCGCG GCAGACGATGCCGCAAGGGCAGCGGGCGAGCCCGCCATTATCGACTACGACTTCATTGCCGACCATGCCGCCGAATTCGA AGCCTATCGCGCCGCGGTCGATGCAACCAGCTGGGAGAGCATCCTCGACCAGTCCGGCCTGACCCGCGCCGAGATCGAAG AAGCAGCCGGCATCTACATGAATGCCGGCTCTGTCATCGCCACCTGGGCGATGGGCGTCACCCAGCACCGGCACTCGGTC CTGATCGTTCGCGAAATCGCCAACTTCATGCTGCTGCGGGGCAATGTCGGCCGTCCCGGCGCCGGCCTCTGCCCGGTGCG CGGCCATTCCAACGTGCAGGGCGACCGCACCGTCGGCATCGACGAAAAAGCGCCGCCGGCGCTTCTCGACGCACTGGAAA AAGAACTCGGCGTTCCCATGCCGCGCAAGCCCGGCCACAATACCGTTGAGGCCGTGGCCGCCATGCTGGATGGGAAGGCT CAGACCTTCATCGCACTCGGCGGCAATTTCCTGCGGGCGACCCCAGACAGTCCGCTGATCGTCAAGGCGTTCGAAAAGCA GAAGCTCACCGTCAACATCACCACCAAGCTCAACCACTCGCATCTGGTGCCGGGCGAAACCTCCTTCGTGCTGCCCTGCC TCGGCCGGACGGAAATCGACCGCAATTCGGCCGGCCGGTCGCAGATCGTCACCGTCGAGGATTCCATGAGCATGGTGCAT GGTTCCGGCGGCATTAATCCGCCAGCCTCGGATGCACTTCGCTCGGAAGTCGCCATCGTCGCCGGCATCGCTGAAGCCAC GCTCGGCAATGTCAATGTGAACTGGAAGGCGCTCGCCGATGACTACGATCTCATCCGCGACATGATCGAGCGCGTCATTC CGGGTTTCGACAATTTCAACGAGCGTGTCCGTATTCCCCGTGGTTTTCATCTACGCAACGCTGCTGCCGAACGGCAATGG AACACGCCGGCGAAAAAGGCCACCTTCTATAGCGGCCCCCTGCCCGAGAAAACCGAGCACCAGCAGGCTCTGACCCGCGA CAATCTTTTCGTGCTACAGACCTTCCGCAGCCACGATCAGTACAACACCACGATCTACGGCATGGATGACCGTTATCGCG GCGTCTATGGCGAGCGCCAGGTCATTTTCATGAACCCTGCGGATATGGAGGCGCTTGGCGCCCATTCCCGTCAGCGTGTG GATGTCATCGGAGAATATGGCGACGGGGTGGAGCGCATCGCCAGGAACTTCCGTCTGGTGCCCTATAATATCCCGCGCGG CAGCGTCGGCGGGTATTATCCGGAGCTGAACGTGCTGGTGCCGCTGTCGAGCTACGGCGAAGGCAGCTTCACGCCGACAT CGAAATCGGTGCTGGTTTCCGTCCGCCTGCTCGCCGATGCCAGATGA
Upstream 100 bases:
>100_bases TTTACGCCGTTCCCATTTCAATTGTCGAACAGCGAATAAGGGTTCTGCCGCAATGCACAATTAAGACATTGACAGCCGGC CCGGATCGGGGCTTCTGAAG
Downstream 100 bases:
>100_bases GCCGGATGCCCGCTTGACAGATGAGGAACGATCCGCAGCCGCTTTTTTGGCGGCCGTGGAAAAACTCCAGCAATCGTCTC CAGCGCTGACGGTGACGGGA
Product: formate dehydrogenase H alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MFLTNGKRRQPGTRRQFPGKRTMSKTDFIGKASTAAGGWGALKSVGKRLLESGAPISGARTLLKTNQPDGFDCPGCAWGD PEHGSSFEFCENGVKAVSWEATEARVPPDFFARHTVSELRSWSDYDLEKQGRLTHPMRYDRASDTYLPVSWDDAFAEIGR ILNSLDSPDRAEFYTSGRASNEAAFLYQLMVRLYGTNNFPDCSNMCHEASGVGLNASIGVGKGTVLLEDFEQTDAIFVIG QNPGTNHPRMLGDLRRAALRGARIAVFNPIREKGLERFADPQDKIEMITGSSTKIATNYYQPRQGGDMAAVRGMSKAVFA ADDAARAAGEPAIIDYDFIADHAAEFEAYRAAVDATSWESILDQSGLTRAEIEEAAGIYMNAGSVIATWAMGVTQHRHSV LIVREIANFMLLRGNVGRPGAGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVPMPRKPGHNTVEAVAAMLDGKA QTFIALGGNFLRATPDSPLIVKAFEKQKLTVNITTKLNHSHLVPGETSFVLPCLGRTEIDRNSAGRSQIVTVEDSMSMVH GSGGINPPASDALRSEVAIVAGIAEATLGNVNVNWKALADDYDLIRDMIERVIPGFDNFNERVRIPRGFHLRNAAAERQW NTPAKKATFYSGPLPEKTEHQQALTRDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFMNPADMEALGAHSRQRV DVIGEYGDGVERIARNFRLVPYNIPRGSVGGYYPELNVLVPLSSYGEGSFTPTSKSVLVSVRLLADAR
Sequences:
>Translated_788_residues MFLTNGKRRQPGTRRQFPGKRTMSKTDFIGKASTAAGGWGALKSVGKRLLESGAPISGARTLLKTNQPDGFDCPGCAWGD PEHGSSFEFCENGVKAVSWEATEARVPPDFFARHTVSELRSWSDYDLEKQGRLTHPMRYDRASDTYLPVSWDDAFAEIGR ILNSLDSPDRAEFYTSGRASNEAAFLYQLMVRLYGTNNFPDCSNMCHEASGVGLNASIGVGKGTVLLEDFEQTDAIFVIG QNPGTNHPRMLGDLRRAALRGARIAVFNPIREKGLERFADPQDKIEMITGSSTKIATNYYQPRQGGDMAAVRGMSKAVFA ADDAARAAGEPAIIDYDFIADHAAEFEAYRAAVDATSWESILDQSGLTRAEIEEAAGIYMNAGSVIATWAMGVTQHRHSV LIVREIANFMLLRGNVGRPGAGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVPMPRKPGHNTVEAVAAMLDGKA QTFIALGGNFLRATPDSPLIVKAFEKQKLTVNITTKLNHSHLVPGETSFVLPCLGRTEIDRNSAGRSQIVTVEDSMSMVH GSGGINPPASDALRSEVAIVAGIAEATLGNVNVNWKALADDYDLIRDMIERVIPGFDNFNERVRIPRGFHLRNAAAERQW NTPAKKATFYSGPLPEKTEHQQALTRDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFMNPADMEALGAHSRQRV DVIGEYGDGVERIARNFRLVPYNIPRGSVGGYYPELNVLVPLSSYGEGSFTPTSKSVLVSVRLLADAR >Mature_788_residues MFLTNGKRRQPGTRRQFPGKRTMSKTDFIGKASTAAGGWGALKSVGKRLLESGAPISGARTLLKTNQPDGFDCPGCAWGD PEHGSSFEFCENGVKAVSWEATEARVPPDFFARHTVSELRSWSDYDLEKQGRLTHPMRYDRASDTYLPVSWDDAFAEIGR ILNSLDSPDRAEFYTSGRASNEAAFLYQLMVRLYGTNNFPDCSNMCHEASGVGLNASIGVGKGTVLLEDFEQTDAIFVIG QNPGTNHPRMLGDLRRAALRGARIAVFNPIREKGLERFADPQDKIEMITGSSTKIATNYYQPRQGGDMAAVRGMSKAVFA ADDAARAAGEPAIIDYDFIADHAAEFEAYRAAVDATSWESILDQSGLTRAEIEEAAGIYMNAGSVIATWAMGVTQHRHSV LIVREIANFMLLRGNVGRPGAGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVPMPRKPGHNTVEAVAAMLDGKA QTFIALGGNFLRATPDSPLIVKAFEKQKLTVNITTKLNHSHLVPGETSFVLPCLGRTEIDRNSAGRSQIVTVEDSMSMVH GSGGINPPASDALRSEVAIVAGIAEATLGNVNVNWKALADDYDLIRDMIERVIPGFDNFNERVRIPRGFHLRNAAAERQW NTPAKKATFYSGPLPEKTEHQQALTRDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFMNPADMEALGAHSRQRV DVIGEYGDGVERIARNFRLVPYNIPRGSVGGYYPELNVLVPLSSYGEGSFTPTSKSVLVSVRLLADAR
Specific function: Probably involved in acid resistance [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787778, Length=751, Percent_Identity=49.0013315579228, Blast_Score=733, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=394, Percent_Identity=29.4416243654822, Blast_Score=155, Evalue=9e-39, Organism=Escherichia coli, GI1788534, Length=408, Percent_Identity=23.5294117647059, Blast_Score=93, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR010046 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: NA
Molecular weight: Translated: 86214; Mature: 86214
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLTNGKRRQPGTRRQFPGKRTMSKTDFIGKASTAAGGWGALKSVGKRLLESGAPISGAR CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH TLLKTNQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVSWEATEARVPPDFFARHTVSELR HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH SWSDYDLEKQGRLTHPMRYDRASDTYLPVSWDDAFAEIGRILNSLDSPDRAEFYTSGRAS CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHEECCCCC NEAAFLYQLMVRLYGTNNFPDCSNMCHEASGVGLNASIGVGKGTVLLEDFEQTDAIFVIG CHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE QNPGTNHPRMLGDLRRAALRGARIAVFNPIREKGLERFADPQDKIEMITGSSTKIATNYY CCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCHHEEEEECCCCEEEECCC QPRQGGDMAAVRGMSKAVFAADDAARAAGEPAIIDYDFIADHAAEFEAYRAAVDATSWES CCCCCCCHHHHHCCCHHEEECCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHH ILDQSGLTRAEIEEAAGIYMNAGSVIATWAMGVTQHRHSVLIVREIANFMLLRGNVGRPG HHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHEEEECCCCCCC AGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVPMPRKPGHNTVEAVAAMLDGKA CCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC QTFIALGGNFLRATPDSPLIVKAFEKQKLTVNITTKLNHSHLVPGETSFVLPCLGRTEID EEEEEECCCEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCC RNSAGRSQIVTVEDSMSMVHGSGGINPPASDALRSEVAIVAGIAEATLGNVNVNWKALAD CCCCCCCEEEEEECCHHHEECCCCCCCCHHHHHHHHHHHEEEHHHHHCCCCCCEEEEECC DYDLIRDMIERVIPGFDNFNERVRIPRGFHLRNAAAERQWNTPAKKATFYSGPLPEKTEH HHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHCEEECCCCCCCHHH QQALTRDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFMNPADMEALGAHSRQRV HHHHHHCCEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHH DVIGEYGDGVERIARNFRLVPYNIPRGSVGGYYPELNVLVPLSSYGEGSFTPTSKSVLVS HEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEE VRLLADAR EEEECCCC >Mature Secondary Structure MFLTNGKRRQPGTRRQFPGKRTMSKTDFIGKASTAAGGWGALKSVGKRLLESGAPISGAR CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH TLLKTNQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVSWEATEARVPPDFFARHTVSELR HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH SWSDYDLEKQGRLTHPMRYDRASDTYLPVSWDDAFAEIGRILNSLDSPDRAEFYTSGRAS CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHEECCCCC NEAAFLYQLMVRLYGTNNFPDCSNMCHEASGVGLNASIGVGKGTVLLEDFEQTDAIFVIG CHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEE QNPGTNHPRMLGDLRRAALRGARIAVFNPIREKGLERFADPQDKIEMITGSSTKIATNYY CCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCHHEEEEECCCCEEEECCC QPRQGGDMAAVRGMSKAVFAADDAARAAGEPAIIDYDFIADHAAEFEAYRAAVDATSWES CCCCCCCHHHHHCCCHHEEECCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHH ILDQSGLTRAEIEEAAGIYMNAGSVIATWAMGVTQHRHSVLIVREIANFMLLRGNVGRPG HHHHCCCCHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHEEEECCCCCCC AGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVPMPRKPGHNTVEAVAAMLDGKA CCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC QTFIALGGNFLRATPDSPLIVKAFEKQKLTVNITTKLNHSHLVPGETSFVLPCLGRTEID EEEEEECCCEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCC RNSAGRSQIVTVEDSMSMVHGSGGINPPASDALRSEVAIVAGIAEATLGNVNVNWKALAD CCCCCCCEEEEEECCHHHEECCCCCCCCHHHHHHHHHHHEEEHHHHHCCCCCCEEEEECC DYDLIRDMIERVIPGFDNFNERVRIPRGFHLRNAAAERQWNTPAKKATFYSGPLPEKTEH HHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHCEEECCCCCCCHHH QQALTRDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFMNPADMEALGAHSRQRV HHHHHHCCEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHH DVIGEYGDGVERIARNFRLVPYNIPRGSVGGYYPELNVLVPLSSYGEGSFTPTSKSVLVS HEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEE VRLLADAR EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]