Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888850
Identifier: 15888850
GI number: 15888850
Start: 1517218
End: 1517544
Strand: Direct
Name: 15888850
Synonym: Atu1525
Alternate gene names: NA
Gene position: 1517218-1517544 (Clockwise)
Preceding gene: 159184800
Following gene: 159184802
Centisome position: 53.39
GC content: 65.75
Gene sequence:
>327_bases ATGAAAAAGTTCGTCACCATTCTTCTGGCAGCCACCGTTCTTGCAGCACCGATGGCGCAGGCCCAGAGCCGCCACGATGA CCGCCATCGCGGCGTCACCGTCGAACGTCAGGTCACCACCAAGAAGGTCATCGTCAAGAAGCACCGCTGGGATCGCGGCC AACGCCTTTCGGCCCGCGAGCGCCGCAACATGGTGGACCGCCGTGACTACCGCCGTTACCACCTCGCAGAACCGCGCCGC GACCAGCGCTGGGTCCGCGTCGACAACCAGTTCCTCCTCATCAACGCCGTCAGCGGCCTGATCGTCGGCCTCGCCGCCGC CCGCTGA
Upstream 100 bases:
>100_bases TAACCATTAACAACCATTACATAAATGTAATTTTAAATTCAGTTTCCGTTCATTCGTTTATTCGTAAGTTCTCCTCATCG AAACACGAGAGGAAACTTCC
Downstream 100 bases:
>100_bases GTTGAACCATAAACCGAAATGAAAAAGGCCCGCTTGCGCGGGCCTTTTGTTTGTCGTTTCAGCCGATCAAAAAATATCGG CGCCGCTACCCCATGGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MKKFVTILLAATVLAAPMAQAQSRHDDRHRGVTVERQVTTKKVIVKKHRWDRGQRLSARERRNMVDRRDYRRYHLAEPRR DQRWVRVDNQFLLINAVSGLIVGLAAAR
Sequences:
>Translated_108_residues MKKFVTILLAATVLAAPMAQAQSRHDDRHRGVTVERQVTTKKVIVKKHRWDRGQRLSARERRNMVDRRDYRRYHLAEPRR DQRWVRVDNQFLLINAVSGLIVGLAAAR >Mature_108_residues MKKFVTILLAATVLAAPMAQAQSRHDDRHRGVTVERQVTTKKVIVKKHRWDRGQRLSARERRNMVDRRDYRRYHLAEPRR DQRWVRVDNQFLLINAVSGLIVGLAAAR
Specific function: Unknown
COG id: COG5455
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12697; Mature: 12697
Theoretical pI: Translated: 12.19; Mature: 12.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFVTILLAATVLAAPMAQAQSRHDDRHRGVTVERQVTTKKVIVKKHRWDRGQRLSARE CHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHH RRNMVDRRDYRRYHLAEPRRDQRWVRVDNQFLLINAVSGLIVGLAAAR HHCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCC >Mature Secondary Structure MKKFVTILLAATVLAAPMAQAQSRHDDRHRGVTVERQVTTKKVIVKKHRWDRGQRLSARE CHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHH RRNMVDRRDYRRYHLAEPRRDQRWVRVDNQFLLINAVSGLIVGLAAAR HHCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA