Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888750
Identifier: 15888750
GI number: 15888750
Start: 1419730
End: 1420608
Strand: Direct
Name: 15888750
Synonym: Atu1423
Alternate gene names: NA
Gene position: 1419730-1420608 (Clockwise)
Preceding gene: 159184753
Following gene: 159184755
Centisome position: 49.96
GC content: 60.64
Gene sequence:
>879_bases TTGAGTCCTAACCACGTAGATCATCTCGTATTGCCGGTTGCACAGATCGACATCGCCACCGCGCGGCTTGCAAATCTCGG CTTCACCGTTGCGCCTTTGGCGGTTCATCCCTTCGGCACGGCGAATGCCTGTGTGTTCCTTGCCGATGGCACCTATCTGG AGCCTCTCGCAGTTAATGACCCGGCTAAATATGGTGAGTCCGCTAACAGAGGTGACGTATTCACCGGCAGGGACCGAGCC TTTCGCGAAAGCTGTGGTCCGGAAGGTTTCTCGGCTCTCGTTGCCAGGAGTGGGGATGCTTTCGTTGATCACGAACGGTT CGTCGCGGCGGGCCTGTCCGCCGGTGATCTTTTTGAGTTTTCGCGGCCGGTGCAGATGCCGGATGGTTCCCGCAGCGAAG CGGCATTCCGGCTGGCTTTTGCGGCAAGCGGGGCGGCGGCGGATTTTTTCCTGTTCGGCTGCCAGCGGCTGAAGGCCTTG CCGGGAGACCGCACTGAGCTGGAGCGGCATGCCAACGCTGTCACAGGGCTCTTCGAAATCGTCCTGTTTTCCGGCGGAGA TGCGAAGGCGGCTCGCCTGATCGAAACGGTCTTTGGCTGTAAATCCGCGATGTCCCCGGGCGGAGATATGGTTTTCGCAA CCGGCAATGCCAGGATCAGATTGACCGAAAAGCCGGCCGTCGCCGACCTTGACCTGAATACTTCAAATCGGGGTGATGGT GGGCTGCGCGGCGCAGGCATCGTCTTCTCCGTCACCGATCTTGCCGTGACAGCGGCAGTACTTGCTGCTAATGGCGTCTC CAGCATGGAAGCGGGCGGCCGGCTGGTGGTGCCCGCAGCACCCGGTCAGGGCGTCGCCTTCGCCTTCGAGGAAATATGA
Upstream 100 bases:
>100_bases ACGAAATAACACGTCTCCTCCGGCCAACGGTTTGCCTCGCAGTTTTCCGCGTGCTTTTCTGGTGCCAGACAATGCCTCCT CCTGACGAAGGGCCTTTCCA
Downstream 100 bases:
>100_bases TGAGCGTTACGAACAATCTCAAAGTCACCGCCGGCGATGGTGCCAGCAAGGTCTCCTTCTGCAATACCGAGCGTTTTTCG CTGATTGCCGGCCCCTGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSPNHVDHLVLPVAQIDIATARLANLGFTVAPLAVHPFGTANACVFLADGTYLEPLAVNDPAKYGESANRGDVFTGRDRA FRESCGPEGFSALVARSGDAFVDHERFVAAGLSAGDLFEFSRPVQMPDGSRSEAAFRLAFAASGAAADFFLFGCQRLKAL PGDRTELERHANAVTGLFEIVLFSGGDAKAARLIETVFGCKSAMSPGGDMVFATGNARIRLTEKPAVADLDLNTSNRGDG GLRGAGIVFSVTDLAVTAAVLAANGVSSMEAGGRLVVPAAPGQGVAFAFEEI
Sequences:
>Translated_292_residues MSPNHVDHLVLPVAQIDIATARLANLGFTVAPLAVHPFGTANACVFLADGTYLEPLAVNDPAKYGESANRGDVFTGRDRA FRESCGPEGFSALVARSGDAFVDHERFVAAGLSAGDLFEFSRPVQMPDGSRSEAAFRLAFAASGAAADFFLFGCQRLKAL PGDRTELERHANAVTGLFEIVLFSGGDAKAARLIETVFGCKSAMSPGGDMVFATGNARIRLTEKPAVADLDLNTSNRGDG GLRGAGIVFSVTDLAVTAAVLAANGVSSMEAGGRLVVPAAPGQGVAFAFEEI >Mature_291_residues SPNHVDHLVLPVAQIDIATARLANLGFTVAPLAVHPFGTANACVFLADGTYLEPLAVNDPAKYGESANRGDVFTGRDRAF RESCGPEGFSALVARSGDAFVDHERFVAAGLSAGDLFEFSRPVQMPDGSRSEAAFRLAFAASGAAADFFLFGCQRLKALP GDRTELERHANAVTGLFEIVLFSGGDAKAARLIETVFGCKSAMSPGGDMVFATGNARIRLTEKPAVADLDLNTSNRGDGG LRGAGIVFSVTDLAVTAAVLAANGVSSMEAGGRLVVPAAPGQGVAFAFEEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30282; Mature: 30151
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPNHVDHLVLPVAQIDIATARLANLGFTVAPLAVHPFGTANACVFLADGTYLEPLAVND CCCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCEECCEECCC PAKYGESANRGDVFTGRDRAFRESCGPEGFSALVARSGDAFVDHERFVAAGLSAGDLFEF HHHHCCCCCCCCEECCCCHHHHHHCCCCHHHHHHHCCCCCEECCHHHHHCCCCCCCHHHC SRPVQMPDGSRSEAAFRLAFAASGAAADFFLFGCQRLKALPGDRTELERHANAVTGLFEI CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEE VLFSGGDAKAARLIETVFGCKSAMSPGGDMVFATGNARIRLTEKPAVADLDLNTSNRGDG EEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCEEEEECCCCCCCCC GLRGAGIVFSVTDLAVTAAVLAANGVSSMEAGGRLVVPAAPGQGVAFAFEEI CCCCCEEEEEHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCEEEEEECC >Mature Secondary Structure SPNHVDHLVLPVAQIDIATARLANLGFTVAPLAVHPFGTANACVFLADGTYLEPLAVND CCCCCCCEEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCEECCEECCC PAKYGESANRGDVFTGRDRAFRESCGPEGFSALVARSGDAFVDHERFVAAGLSAGDLFEF HHHHCCCCCCCCEECCCCHHHHHHCCCCHHHHHHHCCCCCEECCHHHHHCCCCCCCHHHC SRPVQMPDGSRSEAAFRLAFAASGAAADFFLFGCQRLKALPGDRTELERHANAVTGLFEI CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEE VLFSGGDAKAARLIETVFGCKSAMSPGGDMVFATGNARIRLTEKPAVADLDLNTSNRGDG EEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCEEEEECCCCCCCCC GLRGAGIVFSVTDLAVTAAVLAANGVSSMEAGGRLVVPAAPGQGVAFAFEEI CCCCCEEEEEHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA