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The map label for this gene is ygaE [C]

Identifier: 15888746

GI number: 15888746

Start: 1415598

End: 1416332

Strand: Direct

Name: ygaE [C]

Synonym: Atu1419

Alternate gene names: 15888746

Gene position: 1415598-1416332 (Clockwise)

Preceding gene: 15888744

Following gene: 159184753

Centisome position: 49.82

GC content: 60.95

Gene sequence:

>735_bases
ATGAGGCAGGTGGATGCTGCGACACATGGCGGCCGGGCGGTGATCGAACTCAGGGAAAAAATCCTGAGTGGCGAATTGCC
TGGCGGCATGCGGCTCTTCGAAGTGTCGACCGCCGAGCTTCTGGATATTTCCCGAACTCCGGTGCGCGAAGCGCTGTCAC
GCCTCACGGAAGAAGGTTTGCTTAATCGTCTGCCGGGCGGCGGATTTGTTGTGCGCCGCTTTGGTTTTGCGGATGTCGTG
GATGCCATTGAAGTACGTGGCGTCATGGAGGGTACGGCGGCGCGGCTTGCCGCTGAGCGCGGTGTCTCGAAAGTGGCGCT
GGAGGAGATCGATGCCACTGTCCAGCAATTGGACCTGTGCTTCGGTGATCGTGTCGATGACGTCGATTTCGATGGTTACG
CAGCGCTCAATCGGATTTTTCATCATCAACTGGCGGCGCTCTGCGGCAGTGAGATGATTCGCCGCGAGGTCGAGCGCGCA
AGCTCCCTGCCTTTTGCGTCCCCTTCGGCCTTTCTGCCCGACAAGGCGAATATTGGCGCCTTTCGCCGCTCGCTGCGAGG
CGCACAGGAGCAGCACAAGGCGATAGTCGCGGCAATCGTGGCGCGGGAAGGCGCGCGCGCGGAGGCTGTGGCGCGGGAGC
ATTCCCGCACAGCACGCACCAATCTTGAATACATGATCCGCGAAGCGCCTGAACTGATTGCGCAGGTTCCGGGTCTCGCA
CTCATCAGCGACTAA

Upstream 100 bases:

>100_bases
TCCTGTTGCTTGAGTTGCTAATGTATACATGGCATGTCGCTTGAATAAGCGTGCTCGATGTCGTTGATGGCGGCGCTCCG
GTGGATGGAAGGGGTGAGAT

Downstream 100 bases:

>100_bases
GCGGCGGAAATCGCTGCAAATCCAGGGGTGGCGCCTTTTGGCGCCGCCTTTATTTTTGTCGACACCCTCCCTGACGCGGT
AATTTTGCGCTTGCAATTTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator VanR; GntR-Family Transcriptional Regulator; Transcriptional Regulator Gntr Family Protein; Ferulate Or Vanillate Catabolism Transcriptional Regulator; VanR Protein; GntR Family Regulatory Protein

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGLLNRLPGGGFVVRRFGFADVV
DAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLCFGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERA
SSLPFASPSAFLPDKANIGAFRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLA
LISD

Sequences:

>Translated_244_residues
MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGLLNRLPGGGFVVRRFGFADVV
DAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLCFGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERA
SSLPFASPSAFLPDKANIGAFRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLA
LISD
>Mature_244_residues
MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGLLNRLPGGGFVVRRFGFADVV
DAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLCFGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERA
SSLPFASPSAFLPDKANIGAFRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLA
LISD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26543; Mature: 26543

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGL
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHH
LNRLPGGGFVVRRFGFADVVDAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLC
HHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERASSLPFASPSAFLPDKANIGA
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
FRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLA
HHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LISD
EECC
>Mature Secondary Structure
MRQVDAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGL
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHH
LNRLPGGGFVVRRFGFADVVDAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLC
HHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FGDRVDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERASSLPFASPSAFLPDKANIGA
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
FRRSLRGAQEQHKAIVAAIVAREGARAEAVAREHSRTARTNLEYMIREAPELIAQVPGLA
HHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LISD
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA