Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888583
Identifier: 15888583
GI number: 15888583
Start: 1241666
End: 1242007
Strand: Direct
Name: 15888583
Synonym: Atu1253
Alternate gene names: NA
Gene position: 1241666-1242007 (Clockwise)
Preceding gene: 15888582
Following gene: 159184685
Centisome position: 43.7
GC content: 56.43
Gene sequence:
>342_bases ATGACGAATTTTCTGTCTTTTGATGATGTCACCGCAGTGGAGCATGGCGCACCCGCGCCGGAAAGACTGATTTCCGGTGA TCCCAGATTCACGACATGGAATCTCGAAGAGGCTTCCGGTGGTATCTATGCCGGCATCTGGCAGTCCACGCCTGGAAAAT GGCGGGTGGTCTATGATGAATGGGAGTATTTCAACATTCTCGAAGGCCATTCCATCCTGACCGAAGACGGCGGCGCACCG CGCGATCTGAGGCCGGGTGACCGCTTGGTCCTGCGCCCGGGCTTCACAGGCACCTGGGAAGTTTTGGAAACCACGCGGAA GGATTACGTCATCCGGCTTTGA
Upstream 100 bases:
>100_bases AAAGCAATTTTAAGTTGTATATAGGGTTGAAGCCGTTTGACGAAGCGCTCACAATCGCGCAAAGCTATGGGACCAACCAC ATCTGACGGACCGGGATACC
Downstream 100 bases:
>100_bases GGCGGGATGACTGTTTGAAGCTGCTATTGCCCATCGAATTTGAGAATTGATGGAAGGAGCCCGGGAAAGCGGGCTTCCAT ATCCTCGAGACGGACGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 113; Mature: 112
Protein sequence:
>113_residues MTNFLSFDDVTAVEHGAPAPERLISGDPRFTTWNLEEASGGIYAGIWQSTPGKWRVVYDEWEYFNILEGHSILTEDGGAP RDLRPGDRLVLRPGFTGTWEVLETTRKDYVIRL
Sequences:
>Translated_113_residues MTNFLSFDDVTAVEHGAPAPERLISGDPRFTTWNLEEASGGIYAGIWQSTPGKWRVVYDEWEYFNILEGHSILTEDGGAP RDLRPGDRLVLRPGFTGTWEVLETTRKDYVIRL >Mature_112_residues TNFLSFDDVTAVEHGAPAPERLISGDPRFTTWNLEEASGGIYAGIWQSTPGKWRVVYDEWEYFNILEGHSILTEDGGAPR DLRPGDRLVLRPGFTGTWEVLETTRKDYVIRL
Specific function: Unknown
COG id: COG3450
COG function: function code R; Predicted enzyme of the cupin superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12829; Mature: 12698
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFLSFDDVTAVEHGAPAPERLISGDPRFTTWNLEEASGGIYAGIWQSTPGKWRVVYDE CCCCCCCCCCEECCCCCCCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEEC WEYFNILEGHSILTEDGGAPRDLRPGDRLVLRPGFTGTWEVLETTRKDYVIRL CCEEEEECCCEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCEEEEC >Mature Secondary Structure TNFLSFDDVTAVEHGAPAPERLISGDPRFTTWNLEEASGGIYAGIWQSTPGKWRVVYDE CCCCCCCCCEECCCCCCCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEEC WEYFNILEGHSILTEDGGAPRDLRPGDRLVLRPGFTGTWEVLETTRKDYVIRL CCEEEEECCCEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA