Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888582
Identifier: 15888582
GI number: 15888582
Start: 1240976
End: 1241491
Strand: Direct
Name: 15888582
Synonym: Atu1252
Alternate gene names: NA
Gene position: 1240976-1241491 (Clockwise)
Preceding gene: 15888581
Following gene: 15888583
Centisome position: 43.67
GC content: 57.36
Gene sequence:
>516_bases ATGGAAAACCGAACCAGACTGCTTCGAATTGTCAGCTTTTTCCTTGCGTTCGGAATTGCTGCTATGGCCGACGTGCCGGG CATTGCCCCGGTCCCGAAGGCGCAGGCCGAGGCGGAATATCTCCCGACCCAGCAGGATTTTGTCGGGAAATGGAAGCTCA CCGGTGCGACCAGCCGCCCGCCGCGGGATATGAAGACGGCGCCAACGGCCCAGCAGGAAGCGGACGCCACGCAGTTTCAG GAAACGGTAACGACTTTTTACTCCGCCTTCGACTATCTGGAGATCACGGCGGACGGACGTTACAATTTCCATCAAGCCGG TGATCCACCGTCCGCCGCATGCGTCTGGTGCGGGACATGGTCGTTTAATAAGAGTTCCTTATGGCTCAAGCTGGATACCG CGCCGAGGCTCGATATCTATGCGAAGGACGGCGATATGCAGATGACCTACACCGCCGAACCCGACAAGAAGTCGAAATAC AAGTGGCTGGTGTTTGGCTGGACCAAGATGGAGTGA
Upstream 100 bases:
>100_bases TGCGAAATTGGCGGGAAATTGAGGTTGCGCATAGTCGCTTCAAGCGCCGAATCCGCCTAAGACAGACGCTCTCGCATTCC CATCACGAAAGACGTGCAAT
Downstream 100 bases:
>100_bases GCCGGACTTTTCCCGGCTGCGATAGCCCGCCGGGGCAAGGGATGCCAGGTAAGCATTCATCGTTGTCAAGTTGAAAAGCA ATTTTAAGTTGTATATAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MENRTRLLRIVSFFLAFGIAAMADVPGIAPVPKAQAEAEYLPTQQDFVGKWKLTGATSRPPRDMKTAPTAQQEADATQFQ ETVTTFYSAFDYLEITADGRYNFHQAGDPPSAACVWCGTWSFNKSSLWLKLDTAPRLDIYAKDGDMQMTYTAEPDKKSKY KWLVFGWTKME
Sequences:
>Translated_171_residues MENRTRLLRIVSFFLAFGIAAMADVPGIAPVPKAQAEAEYLPTQQDFVGKWKLTGATSRPPRDMKTAPTAQQEADATQFQ ETVTTFYSAFDYLEITADGRYNFHQAGDPPSAACVWCGTWSFNKSSLWLKLDTAPRLDIYAKDGDMQMTYTAEPDKKSKY KWLVFGWTKME >Mature_171_residues MENRTRLLRIVSFFLAFGIAAMADVPGIAPVPKAQAEAEYLPTQQDFVGKWKLTGATSRPPRDMKTAPTAQQEADATQFQ ETVTTFYSAFDYLEITADGRYNFHQAGDPPSAACVWCGTWSFNKSSLWLKLDTAPRLDIYAKDGDMQMTYTAEPDKKSKY KWLVFGWTKME
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19314; Mature: 19314
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENRTRLLRIVSFFLAFGIAAMADVPGIAPVPKAQAEAEYLPTQQDFVGKWKLTGATSRP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHHCEEEEECCCCCCC PRDMKTAPTAQQEADATQFQETVTTFYSAFDYLEITADGRYNFHQAGDPPSAACVWCGTW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEEEEECC SFNKSSLWLKLDTAPRLDIYAKDGDMQMTYTAEPDKKSKYKWLVFGWTKME CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEECC >Mature Secondary Structure MENRTRLLRIVSFFLAFGIAAMADVPGIAPVPKAQAEAEYLPTQQDFVGKWKLTGATSRP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHHCEEEEECCCCCCC PRDMKTAPTAQQEADATQFQETVTTFYSAFDYLEITADGRYNFHQAGDPPSAACVWCGTW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEEEEECC SFNKSSLWLKLDTAPRLDIYAKDGDMQMTYTAEPDKKSKYKWLVFGWTKME CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA