Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15888495
Identifier: 15888495
GI number: 15888495
Start: 1150420
End: 1151610
Strand: Reverse
Name: 15888495
Synonym: Atu1157
Alternate gene names: NA
Gene position: 1151610-1150420 (Counterclockwise)
Preceding gene: 159184642
Following gene: 15888490
Centisome position: 40.53
GC content: 59.03
Gene sequence:
>1191_bases ATGAGACTGAAATCCACCCGGCAGGTTCTTTTCGCGAGTGCCGCGCTTCTTACGCTTTCGGCGCCGGCTTTTGCGCTGGA TGGCGGTGATGTGCTGAAGAAGATCAATGCAGCTTATGCCGCACAGGGCGGCGAGATCGCCGCCGGCTCCGTCGCCGTCA ACGGCGACACGGTGACGCTGAACGGCGTGACCTTCAACGCGGCCGCCGATCCGGCCAAAAAGATCCCGGTTGGCAATATC ACGCTTGAAGGCGTCGAGGAAAACAACGGCGGTTACAAGATCAAGAACGCCCGCTTCGACAACATCGACTACAAGCAGGA AAAGGTAGAAATCAAGGCGAGCGACATTTACATGTCCGGTCTCGTCATCCCGGCCGATGCGACCACGGGCAACGTCGATG CACTGATGTTCTATGATGAAGCCCATAGCGGCCCGATCTCCGTTTCCGTCGACGGCAAGCAGGCTTTCTCGCTTGAGGAA ACCAGCGCGACGATGTCCGTCAGCGACGATAAGAACTCGATCGGTTTCGAACTCGACGCATCCGGCTTCAAGGCCGATCT CAGCGAAGTCACCGACCCGGCGACCAAGGATGCCATTGAAAAGCTGAAGCTGCAGGCGCTTTCCGGCGACATGACCATGA GCGGCAGCTGGGAAGTCGCTTCCGGCACTGTTGATGTCGAGGAATACGCCATCGACCTCGATGACGTCGGTCGCCTCAAC ATGTCGTTCGGTTTCTCCGGCTACACGCTCGCCTTCATCAAGTCGATGCAGGAGACGGTGAAGGCACAGGCGGCAAACCC GAACAAGGAACAGGCGGACCAGGCGGCAAGCCTTGCCATGCTCGGCCTGATGCAGCAGCTGTCCTTCGTCAACGCTGAAA TCAGCTTCGAAGACGCCAGCATCACCAAGCGCGCCATCGACTATGCGGCAAGCCAGCAGGGCATGACGGGCGACCAGCTT GCCCAGACCATCAAGGGCATGGCGCCGATCATGATGGCCTCGCTCAACGTTCCGGAATTGCAGAACATGGTGTCGACGGC CATCAACGCCTATATCGACAACCCGAAGAACTTCTCGATCACGGCCGAGCCGGAAAAGCCGGTTCCGTTCCCGATGATCA TGGGCGCTGCGATGGGTGCGCCGAACACCCTGCCGAAAATGCTCGGCGTGACGGTGACGGCAAACGAATAG
Upstream 100 bases:
>100_bases ATCGATCTAAATTCTGTAGACCTTTGAATAATCGTGAATATAAGTATCACCATTAGCATTCTGACACGGTGCACATCCGT ACGTTGAGGGAAGAAACATC
Downstream 100 bases:
>100_bases GACGACAAAGCCCCGGTTTAAGACCGGGGCTTTTTTCTACTCAGTGCAACGGCGCTGCCGCCGCGTCCGGCTTGTCGTGC AGGGCGAAACGGTCGATCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MRLKSTRQVLFASAALLTLSAPAFALDGGDVLKKINAAYAAQGGEIAAGSVAVNGDTVTLNGVTFNAAADPAKKIPVGNI TLEGVEENNGGYKIKNARFDNIDYKQEKVEIKASDIYMSGLVIPADATTGNVDALMFYDEAHSGPISVSVDGKQAFSLEE TSATMSVSDDKNSIGFELDASGFKADLSEVTDPATKDAIEKLKLQALSGDMTMSGSWEVASGTVDVEEYAIDLDDVGRLN MSFGFSGYTLAFIKSMQETVKAQAANPNKEQADQAASLAMLGLMQQLSFVNAEISFEDASITKRAIDYAASQQGMTGDQL AQTIKGMAPIMMASLNVPELQNMVSTAINAYIDNPKNFSITAEPEKPVPFPMIMGAAMGAPNTLPKMLGVTVTANE
Sequences:
>Translated_396_residues MRLKSTRQVLFASAALLTLSAPAFALDGGDVLKKINAAYAAQGGEIAAGSVAVNGDTVTLNGVTFNAAADPAKKIPVGNI TLEGVEENNGGYKIKNARFDNIDYKQEKVEIKASDIYMSGLVIPADATTGNVDALMFYDEAHSGPISVSVDGKQAFSLEE TSATMSVSDDKNSIGFELDASGFKADLSEVTDPATKDAIEKLKLQALSGDMTMSGSWEVASGTVDVEEYAIDLDDVGRLN MSFGFSGYTLAFIKSMQETVKAQAANPNKEQADQAASLAMLGLMQQLSFVNAEISFEDASITKRAIDYAASQQGMTGDQL AQTIKGMAPIMMASLNVPELQNMVSTAINAYIDNPKNFSITAEPEKPVPFPMIMGAAMGAPNTLPKMLGVTVTANE >Mature_396_residues MRLKSTRQVLFASAALLTLSAPAFALDGGDVLKKINAAYAAQGGEIAAGSVAVNGDTVTLNGVTFNAAADPAKKIPVGNI TLEGVEENNGGYKIKNARFDNIDYKQEKVEIKASDIYMSGLVIPADATTGNVDALMFYDEAHSGPISVSVDGKQAFSLEE TSATMSVSDDKNSIGFELDASGFKADLSEVTDPATKDAIEKLKLQALSGDMTMSGSWEVASGTVDVEEYAIDLDDVGRLN MSFGFSGYTLAFIKSMQETVKAQAANPNKEQADQAASLAMLGLMQQLSFVNAEISFEDASITKRAIDYAASQQGMTGDQL AQTIKGMAPIMMASLNVPELQNMVSTAINAYIDNPKNFSITAEPEKPVPFPMIMGAAMGAPNTLPKMLGVTVTANE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41768; Mature: 41768
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKSTRQVLFASAALLTLSAPAFALDGGDVLKKINAAYAAQGGEIAAGSVAVNGDTVTL CCCCHHHHHHHHHHHHHEECCCCEEECCHHHHHHHHHHHHCCCCCEEECEEEECCCEEEE NGVTFNAAADPAKKIPVGNITLEGVEENNGGYKIKNARFDNIDYKQEKVEIKASDIYMSG ECEEEECCCCCHHCCCCCCEEEEEEEECCCCEEEECCEECCCCCCCCEEEEEEEEEEEEE LVIPADATTGNVDALMFYDEAHSGPISVSVDGKQAFSLEETSATMSVSDDKNSIGFELDA EEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCEEECC SGFKADLSEVTDPATKDAIEKLKLQALSGDMTMSGSWEVASGTVDVEEYAIDLDDVGRLN CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEECCEEEHHHEEECHHHCCEEE MSFGFSGYTLAFIKSMQETVKAQAANPNKEQADQAASLAMLGLMQQLSFVNAEISFEDAS EECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH ITKRAIDYAASQQGMTGDQLAQTIKGMAPIMMASLNVPELQNMVSTAINAYIDNPKNFSI HHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEE TAEPEKPVPFPMIMGAAMGAPNTLPKMLGVTVTANE EECCCCCCCCHHHHHHHCCCCCCCHHHHEEEEEECC >Mature Secondary Structure MRLKSTRQVLFASAALLTLSAPAFALDGGDVLKKINAAYAAQGGEIAAGSVAVNGDTVTL CCCCHHHHHHHHHHHHHEECCCCEEECCHHHHHHHHHHHHCCCCCEEECEEEECCCEEEE NGVTFNAAADPAKKIPVGNITLEGVEENNGGYKIKNARFDNIDYKQEKVEIKASDIYMSG ECEEEECCCCCHHCCCCCCEEEEEEEECCCCEEEECCEECCCCCCCCEEEEEEEEEEEEE LVIPADATTGNVDALMFYDEAHSGPISVSVDGKQAFSLEETSATMSVSDDKNSIGFELDA EEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCEEECC SGFKADLSEVTDPATKDAIEKLKLQALSGDMTMSGSWEVASGTVDVEEYAIDLDDVGRLN CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEECCEEEHHHEEECHHHCCEEE MSFGFSGYTLAFIKSMQETVKAQAANPNKEQADQAASLAMLGLMQQLSFVNAEISFEDAS EECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH ITKRAIDYAASQQGMTGDQLAQTIKGMAPIMMASLNVPELQNMVSTAINAYIDNPKNFSI HHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEE TAEPEKPVPFPMIMGAAMGAPNTLPKMLGVTVTANE EECCCCCCCCHHHHHHHCCCCCCCHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA