Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888432
Identifier: 15888432
GI number: 15888432
Start: 1080634
End: 1081608
Strand: Reverse
Name: 15888432
Synonym: Atu1089
Alternate gene names: NA
Gene position: 1081608-1080634 (Counterclockwise)
Preceding gene: 159184609
Following gene: 15888431
Centisome position: 38.06
GC content: 60.82
Gene sequence:
>975_bases GTGCAAAAGTTGAACCAGACAGTGCTGATCTCCGGCGTTCTCGCCGGCATATGCGCCGCGTTTTTAACGCTTGGCGCAAC GGCACAGTCGTCGCTTTCTTTCCTGCTTTATGCCGGTTCGGCCATGCCCATCTTCATCGCCGGCATGGGCTGGGGCAACC GCGCCGCCATTATCGCTATCATCACCACCGCCATCATCGGCGCGCTCGTCATGTCGCCGCTTTTTGCGCTGACCATTGCG ATCTTCACGCTGATCCCGGCGGGCTGGCTTTCGCATCTCGCCAATCTGGCGCGCCCGGCCTCCGAACTCGGCGGCCCGGA TGATCTGCTCGCCTGGTATCCGCTGTCCGGCATCGTGCTGCATCTGTGCATTCTGGTCTCCGTCGCCGTCGTCATTCTCG GCTGGATGATCGGTTACGGTCCCGATCTCGTTGCCCGCATGGTCGATATCATGATGACCTCGGTACAGAACCGCGAACCC CTGTTCGAACCCAATGCCGAAGCACTTACCCAGACGAAGTCGCTGCTGGTGCTGATGCTGCCGATCGTCCAGGGCGGTCT TTGGGTCATCCTGCTGTTTGCGGCCTATTATGTCGCGACCCGGCTGGTCGGCTCCTTCGGCAAGGGCCTTCGCCCGCGCG AAGACATTGCTTCTGCGCTGCGCATGCACCGCAACGCGATCTTCATCTTTCTTGGCGGCATCGTCGCCATGTTCTTCGGG GGCGTCGCCGCCATGATTGGTGCCGTCATCTGCGGCACCTTCGGCGCGGGCTTCCTGATGGCGGGTTATGCCTCGCTGCA TAAAAAGGCGCGCGGCAAGGACTGGCGGCTGCCGGTTCTCATCCTCGCTTATCTCTCGGCGGTCTTTGTCTTTCCGCTGT TCATCATTCTCGTGCTCGGCCTGAGCGACGTGCGCAGCACGATCTCTCTGACGCCGGCACGGAAAAACGACACAACGAAC GAAACCAAACCATAG
Upstream 100 bases:
>100_bases TCCTTCCGCGTTGGGCGCGGATCGATACCATAAAACCCATGTTGGGGATGAGGCTCTCAGGAGCGATCCTCTAACTGCTT AGTTTCAGCAGGACAGCGAC
Downstream 100 bases:
>100_bases AAAGGATCAAGAAGATGGACGTTATTCTTCTCGAACGCATCAACAAGCTCGGTCAGATGGGCGAAACCGTCAAGGTTCGC GACGGTTATGCCCGTAACTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MQKLNQTVLISGVLAGICAAFLTLGATAQSSLSFLLYAGSAMPIFIAGMGWGNRAAIIAIITTAIIGALVMSPLFALTIA IFTLIPAGWLSHLANLARPASELGGPDDLLAWYPLSGIVLHLCILVSVAVVILGWMIGYGPDLVARMVDIMMTSVQNREP LFEPNAEALTQTKSLLVLMLPIVQGGLWVILLFAAYYVATRLVGSFGKGLRPREDIASALRMHRNAIFIFLGGIVAMFFG GVAAMIGAVICGTFGAGFLMAGYASLHKKARGKDWRLPVLILAYLSAVFVFPLFIILVLGLSDVRSTISLTPARKNDTTN ETKP
Sequences:
>Translated_324_residues MQKLNQTVLISGVLAGICAAFLTLGATAQSSLSFLLYAGSAMPIFIAGMGWGNRAAIIAIITTAIIGALVMSPLFALTIA IFTLIPAGWLSHLANLARPASELGGPDDLLAWYPLSGIVLHLCILVSVAVVILGWMIGYGPDLVARMVDIMMTSVQNREP LFEPNAEALTQTKSLLVLMLPIVQGGLWVILLFAAYYVATRLVGSFGKGLRPREDIASALRMHRNAIFIFLGGIVAMFFG GVAAMIGAVICGTFGAGFLMAGYASLHKKARGKDWRLPVLILAYLSAVFVFPLFIILVLGLSDVRSTISLTPARKNDTTN ETKP >Mature_324_residues MQKLNQTVLISGVLAGICAAFLTLGATAQSSLSFLLYAGSAMPIFIAGMGWGNRAAIIAIITTAIIGALVMSPLFALTIA IFTLIPAGWLSHLANLARPASELGGPDDLLAWYPLSGIVLHLCILVSVAVVILGWMIGYGPDLVARMVDIMMTSVQNREP LFEPNAEALTQTKSLLVLMLPIVQGGLWVILLFAAYYVATRLVGSFGKGLRPREDIASALRMHRNAIFIFLGGIVAMFFG GVAAMIGAVICGTFGAGFLMAGYASLHKKARGKDWRLPVLILAYLSAVFVFPLFIILVLGLSDVRSTISLTPARKNDTTN ETKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34495; Mature: 34495
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKLNQTVLISGVLAGICAAFLTLGATAQSSLSFLLYAGSAMPIFIAGMGWGNRAAIIAI CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH ITTAIIGALVMSPLFALTIAIFTLIPAGWLSHLANLARPASELGGPDDLLAWYPLSGIVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHCCHHHHHH HLCILVSVAVVILGWMIGYGPDLVARMVDIMMTSVQNREPLFEPNAEALTQTKSLLVLML HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH PIVQGGLWVILLFAAYYVATRLVGSFGKGLRPREDIASALRMHRNAIFIFLGGIVAMFFG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVAAMIGAVICGTFGAGFLMAGYASLHKKARGKDWRLPVLILAYLSAVFVFPLFIILVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LSDVRSTISLTPARKNDTTNETKP HHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MQKLNQTVLISGVLAGICAAFLTLGATAQSSLSFLLYAGSAMPIFIAGMGWGNRAAIIAI CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH ITTAIIGALVMSPLFALTIAIFTLIPAGWLSHLANLARPASELGGPDDLLAWYPLSGIVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHCCHHHHHH HLCILVSVAVVILGWMIGYGPDLVARMVDIMMTSVQNREPLFEPNAEALTQTKSLLVLML HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH PIVQGGLWVILLFAAYYVATRLVGSFGKGLRPREDIASALRMHRNAIFIFLGGIVAMFFG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVAAMIGAVICGTFGAGFLMAGYASLHKKARGKDWRLPVLILAYLSAVFVFPLFIILVLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LSDVRSTISLTPARKNDTTNETKP HHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA