Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888356
Identifier: 15888356
GI number: 15888356
Start: 1007540
End: 1007887
Strand: Reverse
Name: 15888356
Synonym: Atu8145
Alternate gene names: NA
Gene position: 1007887-1007540 (Counterclockwise)
Preceding gene: 15888359
Following gene: 159184577
Centisome position: 35.47
GC content: 54.89
Gene sequence:
>348_bases ATGGCTCTACATATGGATATCAGTCAGAACGTTCCCCAGGACGAGAAGTATGAGAAATTTCCGATCGACCGGCCCGGCAA GATCACCTTCATCGGGCATCATCTCAGCGCCAAGGACACCATGCGTTGCCTGGTGCGCAGCATTTCCCTCTATGGCGCGG AACTGGATGTGAGCCCCGAACTGGAAATGCCGACCAATTTCTATCTGGAGATTCTCGGTATTCGCGATGAGATCGGCTGC ACGCTGATCCGCCGGGAGGAAGAAAAGGTCACCATCGGCTTCAACATGCTGATCGATGCGGAATTCCTGCACCATGTCCG TCGGCTGAGTTTCGAGACCAGCGCCTGA
Upstream 100 bases:
>100_bases GATCGACACAGACTAGAGAGAATTGCGTAGATTTCCTTCACGCCCTGGCAAGGAAGCCGCGTTAAAATAGGCACCTAAAG AGGCAATCCGGGAGGTTGTC
Downstream 100 bases:
>100_bases GCCGGCCGCACAGGGCCAGCGATTCGCCGACAGCGTTTCCTGCCGTGTCGTGCTAAGAAAAAACTCTTCCAAAACAGTCA TTGGATAACCGGGCGCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MALHMDISQNVPQDEKYEKFPIDRPGKITFIGHHLSAKDTMRCLVRSISLYGAELDVSPELEMPTNFYLEILGIRDEIGC TLIRREEEKVTIGFNMLIDAEFLHHVRRLSFETSA
Sequences:
>Translated_115_residues MALHMDISQNVPQDEKYEKFPIDRPGKITFIGHHLSAKDTMRCLVRSISLYGAELDVSPELEMPTNFYLEILGIRDEIGC TLIRREEEKVTIGFNMLIDAEFLHHVRRLSFETSA >Mature_114_residues ALHMDISQNVPQDEKYEKFPIDRPGKITFIGHHLSAKDTMRCLVRSISLYGAELDVSPELEMPTNFYLEILGIRDEIGCT LIRREEEKVTIGFNMLIDAEFLHHVRRLSFETSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13281; Mature: 13149
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALHMDISQNVPQDEKYEKFPIDRPGKITFIGHHLSAKDTMRCLVRSISLYGAELDVSPE CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCC LEMPTNFYLEILGIRDEIGCTLIRREEEKVTIGFNMLIDAEFLHHVRRLSFETSA CCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEEECHHHHHHHHHHCCCCCC >Mature Secondary Structure ALHMDISQNVPQDEKYEKFPIDRPGKITFIGHHLSAKDTMRCLVRSISLYGAELDVSPE EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCC LEMPTNFYLEILGIRDEIGCTLIRREEEKVTIGFNMLIDAEFLHHVRRLSFETSA CCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEEECHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA