Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888305
Identifier: 15888305
GI number: 15888305
Start: 950974
End: 951378
Strand: Reverse
Name: 15888305
Synonym: Atu0962
Alternate gene names: NA
Gene position: 951378-950974 (Counterclockwise)
Preceding gene: 15888323
Following gene: 159184554
Centisome position: 33.48
GC content: 64.94
Gene sequence:
>405_bases ATGGTTGATGTCAGCGACATGGAACTCGCCGCCGCCAAGGAGCGCTGGCAAAAGGAGCGCGCCGGGCGTCCCATTCCGGT CTCCGTGCGTTTCGAAGCAGCGTCGGCGCGCGTCATCGTCGATTTCACCAATGGCGCCTGTTTCATGTTTCCGGCCCGGG CGCTGGAAGGCTTGCAGGACGCCACGGCAGAGCAACTCGCCGAAGTCGAACTTCTCGGCGAGACCGGCCTGCATTGGGAG AACCTCGATGTCGACTATACGATCGCCGGCCTGATGAACGGCATCTTTGGCAGCCGCACCTTCATGGAAGCGCAGCGCAA GGGCGGGCAATCCCGTTCCCCGGCGAAGACAGCCGCCAGCCGCGCCAACGGTGCGAAGGGCGGCCGGCCGCGAAAGATGC CCTGA
Upstream 100 bases:
>100_bases GTTCTCACGCAGGGCGGCATGTCGGACCGGGACGTTCGTCGCGCCGTTGCCGTGATCGAAGAGAACCGGACGCTGTTTAT GGAAACCTGGAGACGATATC
Downstream 100 bases:
>100_bases CGCCGTCACCCATCCGGAAACCGCCGCATCATCGCCTCCATTGCCTGCCGATCAGGACCCTGCGGAACGACGTAACCGCC CGTCATCGCGAAGAACTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MVDVSDMELAAAKERWQKERAGRPIPVSVRFEAASARVIVDFTNGACFMFPARALEGLQDATAEQLAEVELLGETGLHWE NLDVDYTIAGLMNGIFGSRTFMEAQRKGGQSRSPAKTAASRANGAKGGRPRKMP
Sequences:
>Translated_134_residues MVDVSDMELAAAKERWQKERAGRPIPVSVRFEAASARVIVDFTNGACFMFPARALEGLQDATAEQLAEVELLGETGLHWE NLDVDYTIAGLMNGIFGSRTFMEAQRKGGQSRSPAKTAASRANGAKGGRPRKMP >Mature_134_residues MVDVSDMELAAAKERWQKERAGRPIPVSVRFEAASARVIVDFTNGACFMFPARALEGLQDATAEQLAEVELLGETGLHWE NLDVDYTIAGLMNGIFGSRTFMEAQRKGGQSRSPAKTAASRANGAKGGRPRKMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14542; Mature: 14542
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDVSDMELAAAKERWQKERAGRPIPVSVRFEAASARVIVDFTNGACFMFPARALEGLQD CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCEEEEEHHHHHCCHHH ATAEQLAEVELLGETGLHWENLDVDYTIAGLMNGIFGSRTFMEAQRKGGQSRSPAKTAAS HHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH RANGAKGGRPRKMP HCCCCCCCCCCCCC >Mature Secondary Structure MVDVSDMELAAAKERWQKERAGRPIPVSVRFEAASARVIVDFTNGACFMFPARALEGLQD CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCEEEEEHHHHHCCHHH ATAEQLAEVELLGETGLHWENLDVDYTIAGLMNGIFGSRTFMEAQRKGGQSRSPAKTAAS HHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH RANGAKGGRPRKMP HCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA