Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887766
Identifier: 15887766
GI number: 15887766
Start: 413701
End: 414582
Strand: Reverse
Name: 15887766
Synonym: Atu0418
Alternate gene names: NA
Gene position: 414582-413701 (Counterclockwise)
Preceding gene: 159184305
Following gene: 159184301
Centisome position: 14.59
GC content: 56.24
Gene sequence:
>882_bases ATGGGCGAAGAAAAAAAGAAGCGGACGGTCGAGATCACCATTGGCGGCAAGTTGCGCAGCTTCGACATCGATGACCCGGT TCTTCCCGATTGGGTGGAGGAAAAGAAGCTTTCCGCCGGCAATTTTCCCTATGACAAGAAGATGAAGCGGGAGGATTACG ACGCCACGCTGGAAGCGCTGCAGGTGGAACTGGTCAAGGTGCAATTCTGGCTGCAGGCGACCGGCAAAAGGGTCATGGCT GTTTTTGAAGGCCGTGACGCGGCGGGCAAGGGCGGCGCGATCTTTGCGACGCACGCTTATCTGAACCCCCGTTATGCCCG CGTGGTGGCGCTGACCAAACCAACGGAAACCGAGCGCGGCCAATGGTATTTCCAGCGCTATATCTCCCATTTTCCGACCG CTGGCGAATTCGTTCTCTTCGACCGTTCCTGGTATAACCGCGCCGGCGTGGAACCGGTCATGGGTTTCTGCACCCCGGAC GAACACAAACGCTTCCTCAAGGAAACGCCGCGTCTGGAAAAGATGCTCGTTCACGACGACATTCACCTTTTCAAATTCTG GCTCGACATCGGCCGCGAAACGCAGATCGAACGCTTCCATGACCGTCGCCAAAGCCCGCTGAAATGCTGGAAGCTTTCCG ACATGGACATCGCTGCACTGACGAAATGGGACGATTACACGCAAAAGCGTGACGAGATGCTGGAAAAAACCCACACCGAT GCCGCGCCCTGGACGGTGGTGCGCGCCAATGACAAGCGCCGCGCACGGGTGAACCTCATTCGCCATATTCTTCTTGCGCT CGATTATGAGGGCAAGGACAGACAGGCCATCGGCGAGATCGACGACAAGATATTGGGATCAGGACCAGATTTTCTCAAAT AA
Upstream 100 bases:
>100_bases CGCAGCCCGGCTCGCCGGTCCTGTTTCACTTGAATTCCGGCAATGGATGTGAACTCATTGGCGGCGAGTTGCCTTTACAC AACAACATCCGGAGGAAACC
Downstream 100 bases:
>100_bases GACCGGGAGACGATCACAAGCGCCCCATCCGAGGCGCTTGTGCTTTCCCTTATTGACCCGGCAGAATGCGCACCGAATAA AGATTGATCGGGCGGCCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MGEEKKKRTVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGNFPYDKKMKREDYDATLEALQVELVKVQFWLQATGKRVMA VFEGRDAAGKGGAIFATHAYLNPRYARVVALTKPTETERGQWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPD EHKRFLKETPRLEKMLVHDDIHLFKFWLDIGRETQIERFHDRRQSPLKCWKLSDMDIAALTKWDDYTQKRDEMLEKTHTD AAPWTVVRANDKRRARVNLIRHILLALDYEGKDRQAIGEIDDKILGSGPDFLK
Sequences:
>Translated_293_residues MGEEKKKRTVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGNFPYDKKMKREDYDATLEALQVELVKVQFWLQATGKRVMA VFEGRDAAGKGGAIFATHAYLNPRYARVVALTKPTETERGQWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPD EHKRFLKETPRLEKMLVHDDIHLFKFWLDIGRETQIERFHDRRQSPLKCWKLSDMDIAALTKWDDYTQKRDEMLEKTHTD AAPWTVVRANDKRRARVNLIRHILLALDYEGKDRQAIGEIDDKILGSGPDFLK >Mature_292_residues GEEKKKRTVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGNFPYDKKMKREDYDATLEALQVELVKVQFWLQATGKRVMAV FEGRDAAGKGGAIFATHAYLNPRYARVVALTKPTETERGQWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDE HKRFLKETPRLEKMLVHDDIHLFKFWLDIGRETQIERFHDRRQSPLKCWKLSDMDIAALTKWDDYTQKRDEMLEKTHTDA APWTVVRANDKRRARVNLIRHILLALDYEGKDRQAIGEIDDKILGSGPDFLK
Specific function: Unknown
COG id: COG2326
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34226; Mature: 34095
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEEKKKRTVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGNFPYDKKMKREDYDATLEAL CCCCCCCEEEEEEECCEEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHH QVELVKVQFWLQATGKRVMAVFEGRDAAGKGGAIFATHAYLNPRYARVVALTKPTETERG HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCH QWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDEHKRFLKETPRLEKMLVHDD HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHH IHLFKFWLDIGRETQIERFHDRRQSPLKCWKLSDMDIAALTKWDDYTQKRDEMLEKTHTD HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHCCC AAPWTVVRANDKRRARVNLIRHILLALDYEGKDRQAIGEIDDKILGSGPDFLK CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GEEKKKRTVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGNFPYDKKMKREDYDATLEAL CCCCCCEEEEEEECCEEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHH QVELVKVQFWLQATGKRVMAVFEGRDAAGKGGAIFATHAYLNPRYARVVALTKPTETERG HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCH QWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDEHKRFLKETPRLEKMLVHDD HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHH IHLFKFWLDIGRETQIERFHDRRQSPLKCWKLSDMDIAALTKWDDYTQKRDEMLEKTHTD HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHCCC AAPWTVVRANDKRRARVNLIRHILLALDYEGKDRQAIGEIDDKILGSGPDFLK CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA