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The map label for this gene is mdcF [H]

Identifier: 15887435

GI number: 15887435

Start: 82362

End: 83306

Strand: Direct

Name: mdcF [H]

Synonym: Atu0080

Alternate gene names: 15887435

Gene position: 82362-83306 (Clockwise)

Preceding gene: 159184151

Following gene: 159184153

Centisome position: 2.9

GC content: 61.27

Gene sequence:

>945_bases
ATGTCTGCCGTTGCCGCGAATGTCGCCCCGATTTTCATTCTTATCCTGATCGGTTGGCTGACCGTCAAGGCTGGCCTGCT
CAGGGCGGATGCCGGCGATATCCTCAGCGATTTCGTCTTCAAGATCGCGGTGCCGACATTGATCTTCCGCACGCTTGCAG
AGGCGAATTTTCACGGCGCATCGCCCTTCCGCCTCTGGATCACCTATTTCGCCGGCGTGGCCGTCACCTGGGCGTTCGGG
CATATCGTCACCCGTTATGTCTTCAAGCAGGATGTGCGCATCGCCGTCATCGCCGGCATTTCCTCGGCTTTCGCGAATAA
TATCTTCATCGGCCTGCCGCTGGTCGGGCGTTCGGTGGGGGATGAGGGGCTGGTGGCTCTCTCCATCCTGCTCGCCATCC
ATCTGCCGGTCATGATGATTGCAGGCACCATCCTGATGGAAAATGCCACACACAAGGCGGTCGGGGGCGAAAAGCGCGGC
ATGGCTGCGGTGTTCAAACAGGTGGGCCGCAATCTCGTGACCAATCCGCTGGTGATCGGTCTTGCCATCGGGCTCTCGAC
CAATGTTTCCGGCGTCGCGCTGACACCCATTTTGAAAACCGTGGTCGATCAGGTCGCCTCGATGGCGGGGCCGGCGGCTC
TTATCTCGCTGGGCATGGCGCTGACGAAATACACCATTCGCGGCAATATGGGCATCGCCGTCACCATGACCGTTTTCAAG
CTGCTGCTTCTGCCCGCCTGCGTATGGGCCATGGGCCACGCGCTCGGCCTCAGCCGCGAATGGACGGCGGCGCTGGTGCT
CACCTCGTCGGTGCCGACGGGCGTGAATGCATGGCTGATCGCCAACCGCTTCGGTATCGGCCACAGTGTCGCGGCCTCCA
CCATCAGCATTTCCACAGCGACCGGCGTTCTGTCCGTGTCTCTATGGGCCTGGCTGCTGAGCTGA

Upstream 100 bases:

>100_bases
TGATGAAAACAAAGAGTGAAAGCGTATTCGCGATTCCATTCCCGCGGAAAAGGCTCTAAAGCGGAGTATCTCCCGCAAAA
GCCGCGAAAGCTTTCCCTCC

Downstream 100 bases:

>100_bases
TTTTGGTTATTTCTGGGCGCTCAGGATCTTGAAGCGGGCGTTGCGGCACACTTCGGCGGTCGTGCGGAATTCCGCCGCCA
GAACCGGTTCGTAGGGCAGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSAVAANVAPIFILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGASPFRLWITYFAGVAVTWAFG
HIVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLVGRSVGDEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRG
MAAVFKQVGRNLVTNPLVIGLAIGLSTNVSGVALTPILKTVVDQVASMAGPAALISLGMALTKYTIRGNMGIAVTMTVFK
LLLLPACVWAMGHALGLSREWTAALVLTSSVPTGVNAWLIANRFGIGHSVAASTISISTATGVLSVSLWAWLLS

Sequences:

>Translated_314_residues
MSAVAANVAPIFILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGASPFRLWITYFAGVAVTWAFG
HIVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLVGRSVGDEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRG
MAAVFKQVGRNLVTNPLVIGLAIGLSTNVSGVALTPILKTVVDQVASMAGPAALISLGMALTKYTIRGNMGIAVTMTVFK
LLLLPACVWAMGHALGLSREWTAALVLTSSVPTGVNAWLIANRFGIGHSVAASTISISTATGVLSVSLWAWLLS
>Mature_313_residues
SAVAANVAPIFILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGASPFRLWITYFAGVAVTWAFGH
IVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLVGRSVGDEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRGM
AAVFKQVGRNLVTNPLVIGLAIGLSTNVSGVALTPILKTVVDQVASMAGPAALISLGMALTKYTIRGNMGIAVTMTVFKL
LLLPACVWAMGHALGLSREWTAALVLTSSVPTGVNAWLIANRFGIGHSVAASTISISTATGVLSVSLWAWLLS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32902; Mature: 32770

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVAANVAPIFILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SPFRLWITYFAGVAVTWAFGHIVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLVGRSVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCEEEECCHHCCCCC
DEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRGMAAVFKQVGRNLVTNPLVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
LAIGLSTNVSGVALTPILKTVVDQVASMAGPAALISLGMALTKYTIRGNMGIAVTMTVFK
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
LLLLPACVWAMGHALGLSREWTAALVLTSSVPTGVNAWLIANRFGIGHSVAASTISISTA
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHEEEEEHH
TGVLSVSLWAWLLS
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SAVAANVAPIFILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SPFRLWITYFAGVAVTWAFGHIVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLVGRSVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCEEEECCHHCCCCC
DEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRGMAAVFKQVGRNLVTNPLVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
LAIGLSTNVSGVALTPILKTVVDQVASMAGPAALISLGMALTKYTIRGNMGIAVTMTVFK
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
LLLLPACVWAMGHALGLSREWTAALVLTSSVPTGVNAWLIANRFGIGHSVAASTISISTA
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHEEEEEHH
TGVLSVSLWAWLLS
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]