Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is ahcY
Identifier: 15887387
GI number: 15887387
Start: 31882
End: 33282
Strand: Reverse
Name: ahcY
Synonym: Atu0029
Alternate gene names: 15887387
Gene position: 33282-31882 (Counterclockwise)
Preceding gene: 15887388
Following gene: 159184130
Centisome position: 1.17
GC content: 57.96
Gene sequence:
>1401_bases ATGAGCCTTGAGAAGGACTACATCGTCGCCGACATCAACCTTGCCGCATTCGGCCGCAAGGAACTGGACATCGCCGAAAC CGAAATGCCGGGCCTGATGTCCTGCCGCAAGGAGTTCGGTGAAAGCAAGCCGCTGAAGGGCGCACGTATCACCGGCTCTC TTCACATGACGATCCAGACCGGTGTTCTCATCGAAACGCTCAAAGAACTGGGCGCGGAAATCCGCTGGGCCTCCTGCAAC ATCTTTTCGACCCAGGACCATGCGGCAGCGGCCATTGCAGCAGCCGGCATTCCGGTCTTCGCCGTCAAGGGTGAAAGCCT GACAGAATATTGGGAATATACCGACAAGATCTTCCAGTGGACCGATGGCGGCCTCTCCAACATGATCCTCGATGATGGCG GCGATGCCACCATGTATATCCTGCTTGGCGCACGCGCCGAAGCCGGTGAGGATGTGCTTTCCAATCCGGGGTCGGAAGAA GAGGAAATCCTCTTCGCGCAGATCAACAAGCGCCTCAAGGCTTCCCCCGGCTGGTTCACCAAGCAGCGTGATGCGTTGAA GGGCGTGACGGAAGAAACGACGACCGGCGTTCATCGTTTGTACGATCTCGCCAAGAAGGGCCTGCTGCCCTTCCCGGCCA TCAACGTCAACGACAGCGTTACCAAGTCGAAGTTCGACAACAAATACGGCTGCAAGGAATCGCTCGTCGACGGCATTCGC CGTGCAACCGACGTGATGATGGCCGGCAAGGTTGCCGTGGTCTGCGGTTACGGCGATGTGGGCAAGGGTTCCGCGGCCTC GCTGCAGGGTGCCGGCGCCCGCGTGAAGGTCACAGAAATCGACCCTATCTGCGCACTTCAGGCCGCGATGGACGGTTTCG AGGTGGTTCGCCTGGAGGACGTGGTTTCCTCCGCCGATATCTTCATCACCACCACCGGCAACAAGGACGTGATCCGCATC GAGCATATGCGCGAGATGAAGGACATGGCCATCGTCGGTAACATCGGCCACTTCGACAATGAAATTCAGGTCGCCTCGCT GCGTAACCTGAAGTGGACGAACATCAAGCCGCAGGTCGACATGATCGAGTTCCCGAAGGGCAACCGCATCATCCTGCTTT CCGAAGGCCGCCTGCTGAACCTTGGCAACGCTACCGGTCACCCGTCCTTCGTCATGTCGGCATCCTTCACCAACCAGGTG CTTGGCCAGATCGAGCTTTTCACCAAGCCGGGTGAATACAAGAACGAAGTTTACGTGCTGCCGAAGCACCTCGATGAGAA GGTCGCGCGCCTCCACCTCGAGAAGCTCGGTGTGCGGCTAACCGAACTTTCCGACCTTCAGGCAGATTATATCGGCATCT CCAAGCAGGGTCCGTTCAAGGCTGAACACTACAGATATTAA
Upstream 100 bases:
>100_bases TCTTTATATCATTATTGCCAGATCGGTTGTGGCCTGCTAAACCGCTGCTACGTTTAAGAGCCGGGCCGTCAGGCGCGGCG TTTCTGATCTGGAGAACCTT
Downstream 100 bases:
>100_bases TATCATAGTTAATATCCACTGAAATTACACAATATCTAGATGCCGTGCGCTTGACAAAGCGCGCGGCATCTTTTTTGCGC GCTCCCTTCCCGCAGATTTA
Product: S-adenosyl-L-homocysteine hydrolase
Products: NA
Alternate protein names: S-adenosyl-L-homocysteine hydrolase; AdoHcyase
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MSLEKDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCN IFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEE EEILFAQINKRLKASPGWFTKQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR RATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVKVTEIDPICALQAAMDGFEVVRLEDVVSSADIFITTTGNKDVIRI EHMREMKDMAIVGNIGHFDNEIQVASLRNLKWTNIKPQVDMIEFPKGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQV LGQIELFTKPGEYKNEVYVLPKHLDEKVARLHLEKLGVRLTELSDLQADYIGISKQGPFKAEHYRY
Sequences:
>Translated_466_residues MSLEKDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCN IFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEE EEILFAQINKRLKASPGWFTKQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR RATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVKVTEIDPICALQAAMDGFEVVRLEDVVSSADIFITTTGNKDVIRI EHMREMKDMAIVGNIGHFDNEIQVASLRNLKWTNIKPQVDMIEFPKGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQV LGQIELFTKPGEYKNEVYVLPKHLDEKVARLHLEKLGVRLTELSDLQADYIGISKQGPFKAEHYRY >Mature_465_residues SLEKDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCNI FSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEEE EILFAQINKRLKASPGWFTKQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRR ATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVKVTEIDPICALQAAMDGFEVVRLEDVVSSADIFITTTGNKDVIRIE HMREMKDMAIVGNIGHFDNEIQVASLRNLKWTNIKPQVDMIEFPKGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQVL GQIELFTKPGEYKNEVYVLPKHLDEKVARLHLEKLGVRLTELSDLQADYIGISKQGPFKAEHYRY
Specific function: May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
COG id: COG0499
COG function: function code H; S-adenosylhomocysteine hydrolase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenosylhomocysteinase family
Homologues:
Organism=Homo sapiens, GI9951915, Length=468, Percent_Identity=58.3333333333333, Blast_Score=501, Evalue=1e-142, Organism=Homo sapiens, GI239937451, Length=440, Percent_Identity=57.7272727272727, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI24308043, Length=464, Percent_Identity=51.0775862068966, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI195539337, Length=464, Percent_Identity=51.0775862068966, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI298286489, Length=464, Percent_Identity=51.0775862068966, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI195539349, Length=464, Percent_Identity=51.0775862068966, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI21361647, Length=464, Percent_Identity=50.2155172413793, Blast_Score=441, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17506425, Length=465, Percent_Identity=57.8494623655914, Blast_Score=505, Evalue=1e-143, Organism=Saccharomyces cerevisiae, GI6320882, Length=479, Percent_Identity=57.2025052192067, Blast_Score=501, Evalue=1e-142, Organism=Drosophila melanogaster, GI24642172, Length=462, Percent_Identity=59.3073593073593, Blast_Score=510, Evalue=1e-145, Organism=Drosophila melanogaster, GI24656245, Length=465, Percent_Identity=50.752688172043, Blast_Score=455, Evalue=1e-128, Organism=Drosophila melanogaster, GI45553387, Length=463, Percent_Identity=50.5399568034557, Blast_Score=446, Evalue=1e-125, Organism=Drosophila melanogaster, GI45553385, Length=462, Percent_Identity=50.4329004329004, Blast_Score=443, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SAHH_AGRT5 (Q8UJ99)
Other databases:
- EMBL: AE007869 - PIR: AF2580 - PIR: D97362 - RefSeq: NP_353068.1 - ProteinModelPortal: Q8UJ99 - SMR: Q8UJ99 - STRING: Q8UJ99 - GeneID: 1132067 - GenomeReviews: AE007869_GR - KEGG: atu:Atu0029 - eggNOG: COG0499 - HOGENOM: HBG352029 - OMA: VITHDHM - PhylomeDB: Q8UJ99 - ProtClustDB: PRK05476 - BioCyc: ATUM176299-1:ATU0029-MONOMER - GO: GO:0005737 - GO: GO:0005488 - HAMAP: MF_00563 - InterPro: IPR000043 - InterPro: IPR015878 - InterPro: IPR020082 - PANTHER: PTHR23420 - PIRSF: PIRSF001109 - TIGRFAMs: TIGR00936
Pfam domain/function: PF05221 AdoHcyase; PF00670 AdoHcyase_NAD
EC number: =3.3.1.1
Molecular weight: Translated: 51160; Mature: 51029
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS00738 ADOHCYASE_1; PS00739 ADOHCYASE_2
Important sites: BINDING 57-57 BINDING 132-132 BINDING 192-192 BINDING 222-222 BINDING 226-226 BINDING 227-227 BINDING 279-279 BINDING 314-314 BINDING 380-380
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEKDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQT CCCCCCEEEEEEEEEECCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEC GVLIETLKELGAEIRWASCNIFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQW CHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEE TDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEEEEILFAQINKRLKASPGWFT CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC KQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR CHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHH RATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVKVTEIDPICALQAAMDGFEVVRLED HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEHHH VVSSADIFITTTGNKDVIRIEHMREMKDMAIVGNIGHFDNEIQVASLRNLKWTNIKPQVD HHCCCCEEEEECCCCCEEEHHHHHHHHHEEEEECCCCCCCCEEEEEECCCEECCCCCCCC MIEFPKGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTKPGEYKNEVYVL EEECCCCCEEEEEECCCEEECCCCCCCCCEEEECCHHHHHHCEEEEEECCCCCCCEEEEE PKHLDEKVARLHLEKLGVRLTELSDLQADYIGISKQGPFKAEHYRY CHHHHHHHHHHHHHHHCCEEEHHHHCCHHHEECCCCCCCCCCCCCC >Mature Secondary Structure SLEKDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQT CCCCCEEEEEEEEEECCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEC GVLIETLKELGAEIRWASCNIFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQW CHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEE TDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEEEEILFAQINKRLKASPGWFT CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC KQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR CHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHH RATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVKVTEIDPICALQAAMDGFEVVRLED HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEHHH VVSSADIFITTTGNKDVIRIEHMREMKDMAIVGNIGHFDNEIQVASLRNLKWTNIKPQVD HHCCCCEEEEECCCCCEEEHHHHHHHHHEEEEECCCCCCCCEEEEEECCCEECCCCCCCC MIEFPKGNRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTKPGEYKNEVYVL EEECCCCCEEEEEECCCEEECCCCCCCCCEEEECCHHHHHHCEEEEEECCCCCCCEEEEE PKHLDEKVARLHLEKLGVRLTELSDLQADYIGISKQGPFKAEHYRY CHHHHHHHHHHHHHHHCCEEEHHHHCCHHHEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194