Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yjeE [H]
Identifier: 15887385
GI number: 15887385
Start: 27520
End: 29031
Strand: Reverse
Name: yjeE [H]
Synonym: Atu0026
Alternate gene names: 15887385
Gene position: 29031-27520 (Counterclockwise)
Preceding gene: 15887386
Following gene: 159184129
Centisome position: 1.02
GC content: 58.2
Gene sequence:
>1512_bases ATGAGCGAAGACATTTTGCCGATCACCATTTCGCTGGCGGGAGAAAAGGACACCATAAGGCTCGGTGAAGACCTTGCCCT GGCCCTGAAACCCGGCGATTGCCTGACGCTGATCGGCGATCTCGGCGCTGGCAAATCAACGCTCGCCCGCGCCTTCATCC GGGCGATGGCGGATGAGCCCGATCTTGAGGTTCCAAGCCCCACCTTCACCATCATCCAGACCTATACGACCCGCATCCCC GTCGCCCATCTCGATCTCTACCGGCTTTCGGATGTTTCCGAGCTAGATGAACTCGGCATTGACGAGATGCTGGAGGACGG TATCTGCCTGATCGAGTGGCCCGACATCGCCGCTGAGGTTTTGCCTCCGGCCCAGACGATCACCCTGCAGCTAACACATT CGGGTGAAGGTCGCGTGGCCGTGATAGAGGCGCCGGCACAACAGAAAGCGCGGCTCGACCGTGTTTTCGCCATTCGTGAA TTCCTGGCGAAAAACGGCAGAGGCGATGCGACTCGCCGTTTCCTGAGTGGTGATGCCTCGACACGCGCCTATGAAACGAT CTCGACCGATGGCCCCGACCTTATTTTGATGGATTGGCGGCGCCCCATGAGGGGAGCGATCGTTGCGGACGGCAAAACTT ACGCGGAAATCGTCCATCTTGCCCAGGATGCGCGCTCCTTCGTGGCGATCGGCGATTATCTGCGAAACAGCGGTTTCCGT GCGCCGGAGATTCTGGCCGCGGATATCGATCAGGGCATTCTTCTTCTGGAGGATCTCGGACGGGAGGGTGTACTTGCTGC AGATGGCACACCGATAGAAGAACGTTATCTTCAAAGTGTCGCCTGTCTCGCCACCCTTCACCAGACACCGCGCCCGGCGT TGCTGCCGATGCGTGATGGCAGCACCTACGACATTCCTTCCTTCGACCGGCAGGCGATGAAGATCGAAGTATCGCTGCTG GTGGAATGGTATCTGCCCCACAAGCGCGGCAAAGCGCTCACCGATGGCGAGAAGCAGGATTATTACGCCATTTGGGACGG CCTGATCGATGCGCTCGCCGGCTGCGAAACGGGACTTCTGCTGCGTGACTTCCATTCGCCGAATATTCTCTGGCAGGCGC AGAATAGCGGCATCGGCCAAGTTGGCCTAATCGATTTTCAGGATGCGATGATTGGCCCCACCGCCTATGATCTCGCTTCC ATCGTGCAGGATGCGCGGGTCACCATCCCCCCCGAACTACAAACACGCCTCATGTCGCATTATCTCAACAGCAGAAAAGC GACGCCCGCTTTCGATGAGGCCGCATTCCTCAAGGCTTTCGCCATCATGTCGGCGCAGCGCAACTGCAAGCTTGCTGGTA TCTGGGTGAGGCTGTTGGAACGGGACAAGAAACCCGGTTATATGAAACATATGCCGCGGACGTTCCGTTATCTCGCTGAC GCGCTTTCGCATCCCGAACTCGCGCCACTCCGGGAATGGTGTGTCCGTATGGGCATGGACTTTAACGACTAA
Upstream 100 bases:
>100_bases TGCATCATGGCACCGTCAGCATCGACAGCCGGCCCGGCAACGGCACCATCGTCACCTGCCGCATTCCCTCCGCCACACTG CCGCACTCCATCGCCGCAGA
Downstream 100 bases:
>100_bases CACGGTTGACCACGATGACGATCAAAAACGCGATGGTGCTGGCCGCCGGGCTTGGCACGCGCATGCGCCCGATCACGGAT ACGATCCCGAAGCCGCTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MSEDILPITISLAGEKDTIRLGEDLALALKPGDCLTLIGDLGAGKSTLARAFIRAMADEPDLEVPSPTFTIIQTYTTRIP VAHLDLYRLSDVSELDELGIDEMLEDGICLIEWPDIAAEVLPPAQTITLQLTHSGEGRVAVIEAPAQQKARLDRVFAIRE FLAKNGRGDATRRFLSGDASTRAYETISTDGPDLILMDWRRPMRGAIVADGKTYAEIVHLAQDARSFVAIGDYLRNSGFR APEILAADIDQGILLLEDLGREGVLAADGTPIEERYLQSVACLATLHQTPRPALLPMRDGSTYDIPSFDRQAMKIEVSLL VEWYLPHKRGKALTDGEKQDYYAIWDGLIDALAGCETGLLLRDFHSPNILWQAQNSGIGQVGLIDFQDAMIGPTAYDLAS IVQDARVTIPPELQTRLMSHYLNSRKATPAFDEAAFLKAFAIMSAQRNCKLAGIWVRLLERDKKPGYMKHMPRTFRYLAD ALSHPELAPLREWCVRMGMDFND
Sequences:
>Translated_503_residues MSEDILPITISLAGEKDTIRLGEDLALALKPGDCLTLIGDLGAGKSTLARAFIRAMADEPDLEVPSPTFTIIQTYTTRIP VAHLDLYRLSDVSELDELGIDEMLEDGICLIEWPDIAAEVLPPAQTITLQLTHSGEGRVAVIEAPAQQKARLDRVFAIRE FLAKNGRGDATRRFLSGDASTRAYETISTDGPDLILMDWRRPMRGAIVADGKTYAEIVHLAQDARSFVAIGDYLRNSGFR APEILAADIDQGILLLEDLGREGVLAADGTPIEERYLQSVACLATLHQTPRPALLPMRDGSTYDIPSFDRQAMKIEVSLL VEWYLPHKRGKALTDGEKQDYYAIWDGLIDALAGCETGLLLRDFHSPNILWQAQNSGIGQVGLIDFQDAMIGPTAYDLAS IVQDARVTIPPELQTRLMSHYLNSRKATPAFDEAAFLKAFAIMSAQRNCKLAGIWVRLLERDKKPGYMKHMPRTFRYLAD ALSHPELAPLREWCVRMGMDFND >Mature_502_residues SEDILPITISLAGEKDTIRLGEDLALALKPGDCLTLIGDLGAGKSTLARAFIRAMADEPDLEVPSPTFTIIQTYTTRIPV AHLDLYRLSDVSELDELGIDEMLEDGICLIEWPDIAAEVLPPAQTITLQLTHSGEGRVAVIEAPAQQKARLDRVFAIREF LAKNGRGDATRRFLSGDASTRAYETISTDGPDLILMDWRRPMRGAIVADGKTYAEIVHLAQDARSFVAIGDYLRNSGFRA PEILAADIDQGILLLEDLGREGVLAADGTPIEERYLQSVACLATLHQTPRPALLPMRDGSTYDIPSFDRQAMKIEVSLLV EWYLPHKRGKALTDGEKQDYYAIWDGLIDALAGCETGLLLRDFHSPNILWQAQNSGIGQVGLIDFQDAMIGPTAYDLASI VQDARVTIPPELQTRLMSHYLNSRKATPAFDEAAFLKAFAIMSAQRNCKLAGIWVRLLERDKKPGYMKHMPRTFRYLADA LSHPELAPLREWCVRMGMDFND
Specific function: Unknown
COG id: COG3178
COG function: function code R; Predicted phosphotransferase related to Ser/Thr protein kinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0079 family [H]
Homologues:
Organism=Escherichia coli, GI1790610, Length=138, Percent_Identity=39.8550724637681, Blast_Score=96, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003442 [H]
Pfam domain/function: PF02367 UPF0079 [H]
EC number: NA
Molecular weight: Translated: 55722; Mature: 55590
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDILPITISLAGEKDTIRLGEDLALALKPGDCLTLIGDLGAGKSTLARAFIRAMADEP CCCCEEEEEEEECCCCCEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCC DLEVPSPTFTIIQTYTTRIPVAHLDLYRLSDVSELDELGIDEMLEDGICLIEWPDIAAEV CCCCCCCCEEEEEEHHCCCCCHHHHHHHHCCHHHHHHCCHHHHHHCCEEEEECCCHHHHH LPPAQTITLQLTHSGEGRVAVIEAPAQQKARLDRVFAIREFLAKNGRGDATRRFLSGDAS CCCCEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC TRAYETISTDGPDLILMDWRRPMRGAIVADGKTYAEIVHLAQDARSFVAIGDYLRNSGFR CCEEEEECCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APEILAADIDQGILLLEDLGREGVLAADGTPIEERYLQSVACLATLHQTPRPALLPMRDG CCHHHHHCCCCCEEEHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC STYDIPSFDRQAMKIEVSLLVEWYLPHKRGKALTDGEKQDYYAIWDGLIDALAGCETGLL CCCCCCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE LRDFHSPNILWQAQNSGIGQVGLIDFQDAMIGPTAYDLASIVQDARVTIPPELQTRLMSH EEECCCCCEEEEECCCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH YLNSRKATPAFDEAAFLKAFAIMSAQRNCKLAGIWVRLLERDKKPGYMKHMPRTFRYLAD HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHH ALSHPELAPLREWCVRMGMDFND HHCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure SEDILPITISLAGEKDTIRLGEDLALALKPGDCLTLIGDLGAGKSTLARAFIRAMADEP CCCEEEEEEEECCCCCEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCC DLEVPSPTFTIIQTYTTRIPVAHLDLYRLSDVSELDELGIDEMLEDGICLIEWPDIAAEV CCCCCCCCEEEEEEHHCCCCCHHHHHHHHCCHHHHHHCCHHHHHHCCEEEEECCCHHHHH LPPAQTITLQLTHSGEGRVAVIEAPAQQKARLDRVFAIREFLAKNGRGDATRRFLSGDAS CCCCEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC TRAYETISTDGPDLILMDWRRPMRGAIVADGKTYAEIVHLAQDARSFVAIGDYLRNSGFR CCEEEEECCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC APEILAADIDQGILLLEDLGREGVLAADGTPIEERYLQSVACLATLHQTPRPALLPMRDG CCHHHHHCCCCCEEEHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC STYDIPSFDRQAMKIEVSLLVEWYLPHKRGKALTDGEKQDYYAIWDGLIDALAGCETGLL CCCCCCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE LRDFHSPNILWQAQNSGIGQVGLIDFQDAMIGPTAYDLASIVQDARVTIPPELQTRLMSH EEECCCCCEEEEECCCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH YLNSRKATPAFDEAAFLKAFAIMSAQRNCKLAGIWVRLLERDKKPGYMKHMPRTFRYLAD HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHH ALSHPELAPLREWCVRMGMDFND HHCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]