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The map label for this gene is secB

Identifier: 15887365

GI number: 15887365

Start: 3907

End: 4389

Strand: Reverse

Name: secB

Synonym: Atu0006

Alternate gene names: 15887365

Gene position: 4389-3907 (Counterclockwise)

Preceding gene: 15887366

Following gene: NA

Centisome position: 0.15

GC content: 57.35

Gene sequence:

>483_bases
ATGACCGCTGAAAATGGCGCACAGGGCGCAGTTAGCCCTTCTCTCAATATTCTTGCCCAGTACATCAAGGATCTCTCTTT
CGAAAATCCGGGTGCTCCTCGTTCTCTGCAGGGTCGTGAGAATGCGCCGGCGATCAACATCAACGTCAATGTCAACGCAA
ACCCGATCTCCGGTTCGGATTTCGACGTTGTTCTGACGCTGAATGCGGAAGCCAAGGATGGCGACAAGATCTTGTTCGCG
GCCGAGCTGGTTTATGGCGGCGTGTTCCGCATTGCCGGCTTCCCGCAGGAACACATGCTGCCGGTCCTCTTCATCGAGTG
CCCGCGCCTGCTCTTCCCCTTCGCCCGCCAGATCATTGCCGATGTCACCCGCAATGGCGGTTTCCCGCCGCTGATGATCG
ACCCGATTGATTTCTCGCAGATGTTTGCGCAGCGCGTTGCCGAAGAACAGGCCAAGGCCCAGGTTCAGGCTGTCCCGAAC
TAA

Upstream 100 bases:

>100_bases
GCGCGTGGAATGGATGGCGATGACGCGATCAGGAAGGGTTGTAAGCCCCGGGTCGAAATGATAGACCGCCTTCCACGAAT
TCACGCCGCGAGGAACCGTA

Downstream 100 bases:

>100_bases
ACGGCACGCACCGCTTTTCATTGCAGACAAAACAAAACCCGGGTTCTTCACCCGGGTTTTTATTTAGCCGATTTTCCATT
TCAAAGTATGGGCGGGCTTT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTAENGAQGAVSPSLNILAQYIKDLSFENPGAPRSLQGRENAPAININVNVNANPISGSDFDVVLTLNAEAKDGDKILFA
AELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIADVTRNGGFPPLMIDPIDFSQMFAQRVAEEQAKAQVQAVPN

Sequences:

>Translated_160_residues
MTAENGAQGAVSPSLNILAQYIKDLSFENPGAPRSLQGRENAPAININVNVNANPISGSDFDVVLTLNAEAKDGDKILFA
AELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIADVTRNGGFPPLMIDPIDFSQMFAQRVAEEQAKAQVQAVPN
>Mature_159_residues
TAENGAQGAVSPSLNILAQYIKDLSFENPGAPRSLQGRENAPAININVNVNANPISGSDFDVVLTLNAEAKDGDKILFAA
ELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIADVTRNGGFPPLMIDPIDFSQMFAQRVAEEQAKAQVQAVPN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=122, Percent_Identity=33.6065573770492, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_AGRT5 (Q8UJC2)

Other databases:

- EMBL:   AE007869
- PIR:   AG2577
- PIR:   F97359
- RefSeq:   NP_353046.1
- ProteinModelPortal:   Q8UJC2
- SMR:   Q8UJC2
- STRING:   Q8UJC2
- GeneID:   1132044
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0006
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q8UJC2
- ProtClustDB:   PRK05751
- BioCyc:   ATUM176299-1:ATU0006-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17311; Mature: 17180

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAENGAQGAVSPSLNILAQYIKDLSFENPGAPRSLQGRENAPAININVNVNANPISGSD
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
FDVVLTLNAEAKDGDKILFAAELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIA
EEEEEEEECCCCCCCEEEEEHHHHHCCHHEECCCCHHHCCHHHHHHCHHHHHHHHHHHHH
DVTRNGGFPPLMIDPIDFSQMFAQRVAEEQAKAQVQAVPN
HHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEECCCC
>Mature Secondary Structure 
TAENGAQGAVSPSLNILAQYIKDLSFENPGAPRSLQGRENAPAININVNVNANPISGSD
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
FDVVLTLNAEAKDGDKILFAAELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIA
EEEEEEEECCCCCCCEEEEEHHHHHCCHHEECCCCHHHCCHHHHHHCHHHHHHHHHHHHH
DVTRNGGFPPLMIDPIDFSQMFAQRVAEEQAKAQVQAVPN
HHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194