Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 239618449

GI number: 239618449

Start: 2221696

End: 2222079

Strand: Reverse

Name: yjgF [C]

Synonym: Kole_2090

Alternate gene names: 239618449

Gene position: 2222079-2221696 (Counterclockwise)

Preceding gene: 239618450

Following gene: 239618448

Centisome position: 96.52

GC content: 41.93

Gene sequence:

>384_bases
GTGTTGAGGGTTGTAAAAACTGACAAAGCACCTGCGGCAATTGGGCCCTACTCTCAAGGAATCCTTAGCAACGGATTCCT
TTTTGTGTCAGGTCAGTTGCCCCTCAACCCGATAACAGGTGAGCTGTTAGACGATTTTCAATCCGCTACCGAGCAAACAA
TTAAGAACGTAATTTCCGTTGTTGAAGCAGCCGGTGGAAAAATCGAGGACATAGTAAAGGTGACTGTTTATATCAGGGAT
ATGCAAAAGTTCTCGATTTTCAACGAGGTTTACAGTAAATTCTTTTCTGAGCATAAACCTGCAAGGGCAGTGGTAGAAGT
CTCAAATCTTCCCAAGAATGCAATATTGGAGATTGAAGCAATAGCTAGGATTAGTAATAGTTAA

Upstream 100 bases:

>100_bases
TTTTTTTATCCCTGGGAAAAATTGCAAGATTCAGGTCATACAAGGCGTGGCAATGTTTGTGCATTAGGTGATATAATTGA
GCAAAATGGGAGGTGGTAGT

Downstream 100 bases:

>100_bases
TAGGAGGTAATAATATGGGTTGTAAGATAGAATTGCCAGATGGCTCAATTAAAGAATACGATCATCCAGTAACTGCAGCG
GATGTTGCCGCTGACCTGTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MLRVVKTDKAPAAIGPYSQGILSNGFLFVSGQLPLNPITGELLDDFQSATEQTIKNVISVVEAAGGKIEDIVKVTVYIRD
MQKFSIFNEVYSKFFSEHKPARAVVEVSNLPKNAILEIEAIARISNS

Sequences:

>Translated_127_residues
MLRVVKTDKAPAAIGPYSQGILSNGFLFVSGQLPLNPITGELLDDFQSATEQTIKNVISVVEAAGGKIEDIVKVTVYIRD
MQKFSIFNEVYSKFFSEHKPARAVVEVSNLPKNAILEIEAIARISNS
>Mature_127_residues
MLRVVKTDKAPAAIGPYSQGILSNGFLFVSGQLPLNPITGELLDDFQSATEQTIKNVISVVEAAGGKIEDIVKVTVYIRD
MQKFSIFNEVYSKFFSEHKPARAVVEVSNLPKNAILEIEAIARISNS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=40.495867768595, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=48, Blast_Score=125, Evalue=7e-31,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=46.4, Blast_Score=122, Evalue=8e-30,
Organism=Escherichia coli, GI1787245, Length=115, Percent_Identity=31.304347826087, Blast_Score=76, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI25148896, Length=120, Percent_Identity=40, Blast_Score=105, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=120, Percent_Identity=40, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=120, Percent_Identity=40, Blast_Score=104, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=41.3223140495868, Blast_Score=101, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=39.3939393939394, Blast_Score=86, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13898; Mature: 13898

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVVKTDKAPAAIGPYSQGILSNGFLFVSGQLPLNPITGELLDDFQSATEQTIKNVISV
CCEEEECCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VEAAGGKIEDIVKVTVYIRDMQKFSIFNEVYSKFFSEHKPARAVVEVSNLPKNAILEIEA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHH
IARISNS
HHHHCCC
>Mature Secondary Structure
MLRVVKTDKAPAAIGPYSQGILSNGFLFVSGQLPLNPITGELLDDFQSATEQTIKNVISV
CCEEEECCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VEAAGGKIEDIVKVTVYIRDMQKFSIFNEVYSKFFSEHKPARAVVEVSNLPKNAILEIEA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHH
IARISNS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]