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The map label for this gene is csp [H]

Identifier: 239618424

GI number: 239618424

Start: 2191464

End: 2191664

Strand: Direct

Name: csp [H]

Synonym: Kole_2064

Alternate gene names: 239618424

Gene position: 2191464-2191664 (Clockwise)

Preceding gene: 239618410

Following gene: 239618425

Centisome position: 95.19

GC content: 44.28

Gene sequence:

>201_bases
ATGACAGGTACAGTTAAGTGGTTCAACAGCAGTAAGGGTTATGGTTTCATCACCAAGGACGAAGGTGGAGACGTGTTTGT
TCATTTTTCAGCTATTGAAGTCGACGGATTCAAGACTCTCGATGAAGGTCAGAGAGTCGAGTTCGAGATTGGCGAAGGCC
CAAAAGGTCCTCAGGCGATAAATGTTAAACCAATCAGATAA

Upstream 100 bases:

>100_bases
TGTTTCTTTTGAGTCTCCGTGGTATAGTAGGTTGTCCCGCAAGGGATAGAATATTAACTTTGCAATATGTGCAAGGTAGT
TTCAAGGAGGAAACAAATCG

Downstream 100 bases:

>100_bases
TCGTTGCGGTTATTAAGAGCGTCCACCAGTAGGTGGACGCTTTTTTATTGTGGTATGATTTTAGAGTAGCATCTTTGTTT
AAGGGGATGAAAATATGATA

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MTGTVKWFNSSKGYGFITKDEGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKGPQAINVKPIR

Sequences:

>Translated_66_residues
MTGTVKWFNSSKGYGFITKDEGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKGPQAINVKPIR
>Mature_65_residues
TGTVKWFNSSKGYGFITKDEGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKGPQAINVKPIR

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=69.8412698412698, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=65.1515151515152, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=66.6666666666667, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=61.9047619047619, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=66.6666666666667, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=61.9047619047619, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983225, Length=55, Percent_Identity=52.7272727272727, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=52.7272727272727, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=47.5409836065574, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7263; Mature: 7132

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTVKWFNSSKGYGFITKDEGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKGPQAI
CCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCEECCCCCEEEEEECCCCCCCCEE
NVKPIR
EEEECC
>Mature Secondary Structure 
TGTVKWFNSSKGYGFITKDEGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKGPQAI
CCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCEECCCCCEEEEEECCCCCCCCEE
NVKPIR
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10048332; 10360571; 10431826; 11322871 [H]