| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is xylS [H]
Identifier: 239618340
GI number: 239618340
Start: 2096954
End: 2099329
Strand: Direct
Name: xylS [H]
Synonym: Kole_1977
Alternate gene names: 239618340
Gene position: 2096954-2099329 (Clockwise)
Preceding gene: 239618339
Following gene: 239618341
Centisome position: 91.09
GC content: 39.48
Gene sequence:
>2376_bases ATGCGGAAGATCCAGCACTTACCATTTGGAATAGATGATCCATATATAAATGCAGCATACACTGCCCAAAGGATTCCCAA CGACCCTACTGATGGAGAAGATGTAATTATAAACTTCAAGACCATGCCTATGGAAGCTGGTCAGCGAGCTTGGCTTGAAG TTGTACGAAATGGCATGACTCATAGAATCAGGGCACAATATCAGTACAATGAGGGTAAATGGGCTTTGTGGAAAGCACGA TTAATGCCATCATGTGCAGCATTCGAGAAAATTAAGTACAGAATCGCTTTTGGTCAGGGAAACGATTCAATGATCTTCTC CGAATGGTATTCGTTCACTGTAAAAAAATGGGTAGAAGATACATGCCTTGGATTTGATGGAAGGAACCTGTTTATCAGCC GCGAGAATGATCAAACCGAGATACCCAGGCTCATAATGTCAAGGTTTCTAACCGATGGTGAAAACATCTATGACATTGAA CTTATTTTTGAAAGAAAAGAGGGCGAGAACTTGTATGGGCTTGGGGAACATTATGACTCATTGGGTCTTAGTGCTGGATC TCCGTATTATATTCATGTATTTGACCAATATAAAGTGCAGCAAAAAAGAGGATACGCGCCTATTCCATTTGTTTTCTCAA ACATGGGATTTGGTTTGTTCTTAAATACCGGTTTCAGAACGAAGGTTCTCTTGAATAAAGGTGCAATAAACGTCGTTACA GAAACTCTTGGGACACCAATAAGTCCTGACAATTTCAGCGCTAAGTTATGGATTGATACAAAGCCTCTTGAGATTATTTC CGACATCTATAAAATAACATCCCCTCAGCTGCCACCAATTTGGGCGTTTGGTCCATGGGCTTCTGCAAACGAGTGGAACT CTCAAAATAAGGTAGAACAAACTCTCGAGAAGTTGAAAAAGTTCAACCTGCCAACAAGCGTGATTGTCATTGAAGCGTGG TCAGATGAACAGACATTTTATATTTTTAATGGAGCGAAATATAATCCGAAAAAAGGTAGCGATTCCTTTAGTTTTGAAGA TTTTGTTTTTAAATTCCCATGGCCAGATCCAAAGGGAATGATTGATAAATTACATATGCAAGGAATTAAGTTAGTACTCT GGCAAATACCGGTTCTTAAAGATATTCCTAATCCTATTGCGCAATACAGGAATGATATCAAGTTTGCTGTCGATAATGGG TATGTCGTTTCAAAGAATGATCAACCATATAGAATTCCTGAGGGAAGATGGTTTGAAAATAGCTTTGTTGTTGATTTCTT CAATAAGGAAGCCAGAGACTGGTGGAAAAAGAAGAGAGAATACTTAGTTAATGAGCTTGGAATAGACGGATTTAAAACTG ACGGCGGTGAACATCTTTGGGGGAGAAATACCTACGTATATCCAAATAAGTCCGCTGCAGAAGCCAGGAATATATATCCA GAGAAATACTTCGAATCCGCAAAGGAGATAGTGGGAGAGGATGGAGTTCTTTTCAGTCGTTCCGGGTATATAGATTCCCC GAAATTCACTCTATTCTGGGTAGGGGATGAAGATTCAGATTTTGAAGCGATGAAATCTAATCTAATTGCGGGACTTAATG TGTCTCTGTCAGGAAATCCTTTTTGGGGATGGGATATAGCAGGATTTAGTGGAGAACTCCCAGAACCGGAACTTTATAGA AGAGCGGTACAGTTGGCTACGTTTACGCCAATTTTTCAATTTCACTCAGAGGCACCTGGAGATCCTATACCAAGTGCTGA AAGATCTCCTTGGAATGTTTCCGAATATTGGGGAGCTCTAGAAATACTCAATGAGTATAGAGAACTTGTTTCTCTCAGGA TGTGCCTTGTTCCATACATCTATATGGAAGCTAAGAATTCAGTGCTTAAAGGAGTTCCTTTGACGACACCGATTCAATTT AAATTCCTGGATTTAGAAATTTCTGAAGAGTCTCTTGCTTTCATGTTTGGGCAGGCATTTCTTGTAATCCCTGTGCTCGA AGCAGGGGTTAAAAACATGAAGGTTTTTTTACCAAAAGGCAGATGGGTAGATTTCTGGACAGGCAGGTGGTACGAAGGGA ATACCACAATCGATATTGATGTTTCTGCTAATCGCATACCTGCCTTTGTAAAAGAAAATGCAATAATACCTTTGAGCCTT CCTGAATCTAAAAATATACTGGAACCGCATTGGGATTTCAACGTTAACGCTGTTTTGTGCATAACTGATGACATTCTCAA AGTAAGGAACAAGATTCTGAAGTTTTTGCATGAATTTTATGAAGTAAAGTGGTTTGGAATACCTGAAAGAGAGGATTCAA AAAACAAGAAGATCTTAAGTATAAAATGGCTGGATATTGAAGAAGTGCAGGGTTGA
Upstream 100 bases:
>100_bases ATGCAGCAAAATTCGGGATGAAGAGTCCTGAAGAAGCTTTAAATGACTTAGTAGTGTTGTTAAAGAACAAGATATCCGAA TAAAGGGAGTTGAAGTTTTC
Downstream 100 bases:
>100_bases GATAATGAATAAGCTTAGCAGATCAATCAAGATTATTGAGAAGCATCAGTCTCCACAAGGAGCTTACATCGCATCACCCA ATTTTTCCCAATATGGATAT
Product: glycoside hydrolase family 31
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MRKIQHLPFGIDDPYINAAYTAQRIPNDPTDGEDVIINFKTMPMEAGQRAWLEVVRNGMTHRIRAQYQYNEGKWALWKAR LMPSCAAFEKIKYRIAFGQGNDSMIFSEWYSFTVKKWVEDTCLGFDGRNLFISRENDQTEIPRLIMSRFLTDGENIYDIE LIFERKEGENLYGLGEHYDSLGLSAGSPYYIHVFDQYKVQQKRGYAPIPFVFSNMGFGLFLNTGFRTKVLLNKGAINVVT ETLGTPISPDNFSAKLWIDTKPLEIISDIYKITSPQLPPIWAFGPWASANEWNSQNKVEQTLEKLKKFNLPTSVIVIEAW SDEQTFYIFNGAKYNPKKGSDSFSFEDFVFKFPWPDPKGMIDKLHMQGIKLVLWQIPVLKDIPNPIAQYRNDIKFAVDNG YVVSKNDQPYRIPEGRWFENSFVVDFFNKEARDWWKKKREYLVNELGIDGFKTDGGEHLWGRNTYVYPNKSAAEARNIYP EKYFESAKEIVGEDGVLFSRSGYIDSPKFTLFWVGDEDSDFEAMKSNLIAGLNVSLSGNPFWGWDIAGFSGELPEPELYR RAVQLATFTPIFQFHSEAPGDPIPSAERSPWNVSEYWGALEILNEYRELVSLRMCLVPYIYMEAKNSVLKGVPLTTPIQF KFLDLEISEESLAFMFGQAFLVIPVLEAGVKNMKVFLPKGRWVDFWTGRWYEGNTTIDIDVSANRIPAFVKENAIIPLSL PESKNILEPHWDFNVNAVLCITDDILKVRNKILKFLHEFYEVKWFGIPEREDSKNKKILSIKWLDIEEVQG
Sequences:
>Translated_791_residues MRKIQHLPFGIDDPYINAAYTAQRIPNDPTDGEDVIINFKTMPMEAGQRAWLEVVRNGMTHRIRAQYQYNEGKWALWKAR LMPSCAAFEKIKYRIAFGQGNDSMIFSEWYSFTVKKWVEDTCLGFDGRNLFISRENDQTEIPRLIMSRFLTDGENIYDIE LIFERKEGENLYGLGEHYDSLGLSAGSPYYIHVFDQYKVQQKRGYAPIPFVFSNMGFGLFLNTGFRTKVLLNKGAINVVT ETLGTPISPDNFSAKLWIDTKPLEIISDIYKITSPQLPPIWAFGPWASANEWNSQNKVEQTLEKLKKFNLPTSVIVIEAW SDEQTFYIFNGAKYNPKKGSDSFSFEDFVFKFPWPDPKGMIDKLHMQGIKLVLWQIPVLKDIPNPIAQYRNDIKFAVDNG YVVSKNDQPYRIPEGRWFENSFVVDFFNKEARDWWKKKREYLVNELGIDGFKTDGGEHLWGRNTYVYPNKSAAEARNIYP EKYFESAKEIVGEDGVLFSRSGYIDSPKFTLFWVGDEDSDFEAMKSNLIAGLNVSLSGNPFWGWDIAGFSGELPEPELYR RAVQLATFTPIFQFHSEAPGDPIPSAERSPWNVSEYWGALEILNEYRELVSLRMCLVPYIYMEAKNSVLKGVPLTTPIQF KFLDLEISEESLAFMFGQAFLVIPVLEAGVKNMKVFLPKGRWVDFWTGRWYEGNTTIDIDVSANRIPAFVKENAIIPLSL PESKNILEPHWDFNVNAVLCITDDILKVRNKILKFLHEFYEVKWFGIPEREDSKNKKILSIKWLDIEEVQG >Mature_791_residues MRKIQHLPFGIDDPYINAAYTAQRIPNDPTDGEDVIINFKTMPMEAGQRAWLEVVRNGMTHRIRAQYQYNEGKWALWKAR LMPSCAAFEKIKYRIAFGQGNDSMIFSEWYSFTVKKWVEDTCLGFDGRNLFISRENDQTEIPRLIMSRFLTDGENIYDIE LIFERKEGENLYGLGEHYDSLGLSAGSPYYIHVFDQYKVQQKRGYAPIPFVFSNMGFGLFLNTGFRTKVLLNKGAINVVT ETLGTPISPDNFSAKLWIDTKPLEIISDIYKITSPQLPPIWAFGPWASANEWNSQNKVEQTLEKLKKFNLPTSVIVIEAW SDEQTFYIFNGAKYNPKKGSDSFSFEDFVFKFPWPDPKGMIDKLHMQGIKLVLWQIPVLKDIPNPIAQYRNDIKFAVDNG YVVSKNDQPYRIPEGRWFENSFVVDFFNKEARDWWKKKREYLVNELGIDGFKTDGGEHLWGRNTYVYPNKSAAEARNIYP EKYFESAKEIVGEDGVLFSRSGYIDSPKFTLFWVGDEDSDFEAMKSNLIAGLNVSLSGNPFWGWDIAGFSGELPEPELYR RAVQLATFTPIFQFHSEAPGDPIPSAERSPWNVSEYWGALEILNEYRELVSLRMCLVPYIYMEAKNSVLKGVPLTTPIQF KFLDLEISEESLAFMFGQAFLVIPVLEAGVKNMKVFLPKGRWVDFWTGRWYEGNTTIDIDVSANRIPAFVKENAIIPLSL PESKNILEPHWDFNVNAVLCITDDILKVRNKILKFLHEFYEVKWFGIPEREDSKNKKILSIKWLDIEEVQG
Specific function: Catalyzes the liberation of alpha-xylose from the non- reducing terminal glucose of xyloglucan oligosaccharides. Has high hydrolytic activity on the disaccharide isoprimeverose. Follows a retaining mechanism of substrate hydrolysis [H]
COG id: COG1501
COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 31 family [H]
Homologues:
Organism=Homo sapiens, GI66346737, Length=613, Percent_Identity=24.4698205546493, Blast_Score=122, Evalue=9e-28, Organism=Homo sapiens, GI221316699, Length=615, Percent_Identity=22.1138211382114, Blast_Score=107, Evalue=4e-23, Organism=Homo sapiens, GI88900491, Length=607, Percent_Identity=22.2405271828666, Blast_Score=107, Evalue=4e-23, Organism=Homo sapiens, GI38202257, Length=607, Percent_Identity=22.2405271828666, Blast_Score=107, Evalue=6e-23, Organism=Homo sapiens, GI310115361, Length=316, Percent_Identity=26.2658227848101, Blast_Score=106, Evalue=1e-22, Organism=Homo sapiens, GI157364974, Length=206, Percent_Identity=27.6699029126214, Blast_Score=90, Evalue=1e-17, Organism=Homo sapiens, GI119393895, Length=562, Percent_Identity=22.4199288256228, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI119393893, Length=562, Percent_Identity=22.4199288256228, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI119393891, Length=562, Percent_Identity=22.4199288256228, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI153791946, Length=426, Percent_Identity=25.5868544600939, Blast_Score=85, Evalue=3e-16, Organism=Escherichia coli, GI2367256, Length=581, Percent_Identity=25.473321858864, Blast_Score=166, Evalue=7e-42, Organism=Escherichia coli, GI2367323, Length=376, Percent_Identity=23.936170212766, Blast_Score=102, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560798, Length=605, Percent_Identity=24.4628099173554, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17560800, Length=605, Percent_Identity=24.4628099173554, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI71991189, Length=610, Percent_Identity=23.6065573770492, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI32563849, Length=239, Percent_Identity=26.3598326359833, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71985706, Length=281, Percent_Identity=22.4199288256228, Blast_Score=81, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319706, Length=607, Percent_Identity=25.0411861614498, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24643749, Length=616, Percent_Identity=22.7272727272727, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24643753, Length=616, Percent_Identity=22.7272727272727, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24643751, Length=616, Percent_Identity=22.7272727272727, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24643746, Length=616, Percent_Identity=22.7272727272727, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357605, Length=616, Percent_Identity=22.7272727272727, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24650054, Length=376, Percent_Identity=24.7340425531915, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI28571440, Length=374, Percent_Identity=25.9358288770053, Blast_Score=77, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571438, Length=375, Percent_Identity=26.1333333333333, Blast_Score=77, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR000322 - InterPro: IPR017853 [H]
Pfam domain/function: PF01055 Glyco_hydro_31 [H]
EC number: NA
Molecular weight: Translated: 91385; Mature: 91385
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKIQHLPFGIDDPYINAAYTAQRIPNDPTDGEDVIINFKTMPMEAGQRAWLEVVRNGMT CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCC HRIRAQYQYNEGKWALWKARLMPSCAAFEKIKYRIAFGQGNDSMIFSEWYSFTVKKWVED EEEEEEEEECCCCEEEEEEHHCCCHHHHEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHH TCLGFDGRNLFISRENDQTEIPRLIMSRFLTDGENIYDIELIFERKEGENLYGLGEHYDS HHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEECCCCHHH LGLSAGSPYYIHVFDQYKVQQKRGYAPIPFVFSNMGFGLFLNTGFRTKVLLNKGAINVVT CCCCCCCCEEEEEECCHHHHHHCCCCCCCHHHHCCCCEEEEECCCEEEEEEECCCHHHHH ETLGTPISPDNFSAKLWIDTKPLEIISDIYKITSPQLPPIWAFGPWASANEWNSQNKVEQ HHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHH TLEKLKKFNLPTSVIVIEAWSDEQTFYIFNGAKYNPKKGSDSFSFEDFVFKFPWPDPKGM HHHHHHHCCCCEEEEEEEECCCCCEEEEEECCEECCCCCCCCCCCCCEEEECCCCCCCHH IDKLHMQGIKLVLWQIPVLKDIPNPIAQYRNDIKFAVDNGYVVSKNDQPYRIPEGRWFEN HHHHHHCCEEEEEEECCHHHHCCCHHHHHCCCEEEEEECCEEECCCCCCEECCCCCEECC SFVVDFFNKEARDWWKKKREYLVNELGIDGFKTDGGEHLWGRNTYVYPNKSAAEARNIYP CEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEECCCCCHHHHHHCCH EKYFESAKEIVGEDGVLFSRSGYIDSPKFTLFWVGDEDSDFEAMKSNLIAGLNVSLSGNP HHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCEEEEEEEECCCC FWGWDIAGFSGELPEPELYRRAVQLATFTPIFQFHSEAPGDPIPSAERSPWNVSEYWGAL CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH EILNEYRELVSLRMCLVPYIYMEAKNSVLKGVPLTTPIQFKFLDLEISEESLAFMFGQAF HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEEEEECCHHHHHHHCCHH LVIPVLEAGVKNMKVFLPKGRWVDFWTGRWYEGNTTIDIDVSANRIPAFVKENAIIPLSL HEEHHHHCCCCCEEEEECCCCEEEECCCEEECCCEEEEEEECCCCCCHHHHCCEEEEEEC PESKNILEPHWDFNVNAVLCITDDILKVRNKILKFLHEFYEVKWFGIPEREDSKNKKILS CCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCEEEE IKWLDIEEVQG EEEECHHHCCC >Mature Secondary Structure MRKIQHLPFGIDDPYINAAYTAQRIPNDPTDGEDVIINFKTMPMEAGQRAWLEVVRNGMT CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCC HRIRAQYQYNEGKWALWKARLMPSCAAFEKIKYRIAFGQGNDSMIFSEWYSFTVKKWVED EEEEEEEEECCCCEEEEEEHHCCCHHHHEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHH TCLGFDGRNLFISRENDQTEIPRLIMSRFLTDGENIYDIELIFERKEGENLYGLGEHYDS HHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEECCCCHHH LGLSAGSPYYIHVFDQYKVQQKRGYAPIPFVFSNMGFGLFLNTGFRTKVLLNKGAINVVT CCCCCCCCEEEEEECCHHHHHHCCCCCCCHHHHCCCCEEEEECCCEEEEEEECCCHHHHH ETLGTPISPDNFSAKLWIDTKPLEIISDIYKITSPQLPPIWAFGPWASANEWNSQNKVEQ HHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHH TLEKLKKFNLPTSVIVIEAWSDEQTFYIFNGAKYNPKKGSDSFSFEDFVFKFPWPDPKGM HHHHHHHCCCCEEEEEEEECCCCCEEEEEECCEECCCCCCCCCCCCCEEEECCCCCCCHH IDKLHMQGIKLVLWQIPVLKDIPNPIAQYRNDIKFAVDNGYVVSKNDQPYRIPEGRWFEN HHHHHHCCEEEEEEECCHHHHCCCHHHHHCCCEEEEEECCEEECCCCCCEECCCCCEECC SFVVDFFNKEARDWWKKKREYLVNELGIDGFKTDGGEHLWGRNTYVYPNKSAAEARNIYP CEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEECCCCCHHHHHHCCH EKYFESAKEIVGEDGVLFSRSGYIDSPKFTLFWVGDEDSDFEAMKSNLIAGLNVSLSGNP HHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCEEEEEEEECCCC FWGWDIAGFSGELPEPELYRRAVQLATFTPIFQFHSEAPGDPIPSAERSPWNVSEYWGAL CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH EILNEYRELVSLRMCLVPYIYMEAKNSVLKGVPLTTPIQFKFLDLEISEESLAFMFGQAF HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEEEEEECCHHHHHHHCCHH LVIPVLEAGVKNMKVFLPKGRWVDFWTGRWYEGNTTIDIDVSANRIPAFVKENAIIPLSL HEEHHHHCCCCCEEEEECCCCEEEECCCEEECCCEEEEEEECCCCCCHHHHCCEEEEEEC PESKNILEPHWDFNVNAVLCITDDILKVRNKILKFLHEFYEVKWFGIPEREDSKNKKILS CCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCEEEE IKWLDIEEVQG EEEECHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10801892; 11427726 [H]