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The map label for this gene is xerC [H]

Identifier: 239618321

GI number: 239618321

Start: 2076003

End: 2076920

Strand: Direct

Name: xerC [H]

Synonym: Kole_1958

Alternate gene names: 239618321

Gene position: 2076003-2076920 (Clockwise)

Preceding gene: 239618320

Following gene: 239618336

Centisome position: 90.18

GC content: 48.37

Gene sequence:

>918_bases
ATGGATTTTGAAGATGCTGTGGAAAGGTTCGCAGAATATCTGGAGTTCGTGAGAAACCTGTCGAAAAATACCGTCGAGTC
ATATACCCGGGATCTCAAACATTTCGGCCAGTACCTGGAAGAATACTCCCTGGATTACCGGCAGGTTAAGAGGCGTGATA
TCGAAAAGTTCATGAAAGAGCTGTCCCAGGGCAATTTCTCTGATTCAAGGCTCTCACCCTCTTCAGTGGCCAGACATCTC
TCCACCCTCAAAACCTTCTACATGTTCCTCTACGTAAGCGGTACAGTGAATAAAATACCAACAGATCTTGTAAAAGCCCC
GAAAACGCGTCGGCGCATACCTGAATACATAAGCTACGAAGAGGTCCAGAAAATACTGGAAGCCTTCCCAGAAACCCATC
TTGGAAAGCGTAACAGAGCCATCGTTGCCCTGATGTATTACTGCGGGCTGCGGGTCAGCGAGGTTTGCTCCCTCACGCTC
AGGGATATCTCTTTGGAGAGCGATCCCCTTGTCCGCGTCAAAAGTGGTAAAGGAGACAAAGACAGGATCGTCCCACTCAC
GCCCGACGCGGTTCGGATAATCTCAGATTATCTGAAACACAGGGATAGATTTCCCGACGCAAACAGGCATATTAAGCTCT
TTGTAGGAATTCGTGGTGAGCCCATTACCAGAAAATCCGTGAACAAAATGCTCCAGAACCACGTGAAAAAAATATTTCCG
GATAAGCACTTGCATCCGCACATCTTCCGCCACAGCTGCGCTACACACTTGCTACAACGCGGTGCAAGCATAAAAATTGT
GCAGGAAATCCTTGGCCACGCCAATATATCCACCACAAGCATCTATCTCCATATCACCGACAGAGAAAAGCGCGAAGCGG
TGAGGTTGCTCTCAAACGGGGAAAAGGCAGGCAAATGA

Upstream 100 bases:

>100_bases
GTTTAGAAACCGTTGTTTTGGTGATGAAATATGATACAATAAAGTGGAGACATAATGTATATTACGTCTCCACTTTTGAC
TATTTTCAGGGGGGAACGTC

Downstream 100 bases:

>100_bases
TCGCCGAAGAAAATATTGTACAAAATATGCAATCGATAAAACAGAACATACAGAATGTACAAGGATATAAAAGCACTATT
AGTATGAGTCAAGTATTGTA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELSQGNFSDSRLSPSSVARHL
STLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTL
RDISLESDPLVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP
DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVRLLSNGEKAGK

Sequences:

>Translated_305_residues
MDFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELSQGNFSDSRLSPSSVARHL
STLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTL
RDISLESDPLVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP
DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVRLLSNGEKAGK
>Mature_305_residues
MDFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELSQGNFSDSRLSPSSVARHL
STLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTL
RDISLESDPLVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP
DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVRLLSNGEKAGK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=32.8719723183391, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1790244, Length=286, Percent_Identity=33.2167832167832, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790768, Length=167, Percent_Identity=26.9461077844311, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790767, Length=170, Percent_Identity=27.0588235294118, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35446; Mature: 35446

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LSQGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYE
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCHHHHHCHHHCCHH
EVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDK
HHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC
DRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP
CCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVRLLSNG
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCC
EKAGK
CCCCC
>Mature Secondary Structure
MDFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LSQGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYE
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCHHHHHCHHHCCHH
EVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDK
HHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC
DRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP
CCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVRLLSNG
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCC
EKAGK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA