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The map label for this gene is rsmB [H]

Identifier: 239618307

GI number: 239618307

Start: 2063189

End: 2064199

Strand: Reverse

Name: rsmB [H]

Synonym: Kole_1944

Alternate gene names: 239618307

Gene position: 2064199-2063189 (Counterclockwise)

Preceding gene: 239618308

Following gene: 239618306

Centisome position: 89.66

GC content: 41.05

Gene sequence:

>1011_bases
ATGAACGATCCACGCCAGAAAGCTCTGGAAACATTGGCTTTTTTTGATCAAAACGGTTATATACCATTCAGGAAGGTGGA
GATAGCCATCTCCACCCTTTCATCTATTGGTAGAAGATTCTATATGAATTTGGTAATGGAAACCCTCAGAAAACGCATTC
AGATAGATTACATACTGAATCAGTTTCTCAAAAAACCGGAAAAACTGCCGGCACCGGTAATGAATGCTCTTCGATTGGGG
GTAACTCAGCTTTTTTACATGGATAGTGTTCCAGAGTTTGCCGCGATACACTCCAGTGTTGAACTTTTGAAAGCAAAGAG
TTTTAAAAAACTGGTCAATGCGGTCCTACGAAAGATAAGCAAACTTGAAACCCCTCTGCCGGAACAGCCCATCTGGCTCA
AGTATTCCCACCCAAAATGGCTGGTTGATTACTGGGAAGAAATAGAGTGGATCAACCCGCTCGAAGAACTCTTGAGTTAC
AACCAGCAACCGCCTCTTCAGGTTTACAGCATCCCAAAAGGAGAATACCATCTGCTGGATGAAAAAGGATACATCTACGA
TAAAAGCGATTTTTCAGATTGCATTATCGTTCTCGAAAAGGGTGAACCAATCTCTTCTTTGAAACGTATTGACGAACTTG
AATATATAGTAAACGAATATTTCCGGTGCCCTGTAATTAAACCCGAAAATTCTTCGCTTGCTTTGCTTTCTGAAAAACCA
TGGCTCTTTCATACAATCAGTAAAGAAGAGTTATTAAAAAGTGCAAATGAGCTGAAAAAGGAACTTTCCAATAGAATAGC
GAACATAGAAGAATTTGTTTATTTAAGTAATACCCTGACACTGGAAGAAAACACTCAACTGCTCGCACCTCTCAAAGAAT
TTGTCCCTGTTCCCCTGGACGATTTTATGATAAGGTATAACCTGCGGGGTACGTGGGATGGATACGGTTACTGGCTTTTG
CCTCCCAATAGCCCAAGACCTGGATACATCGCTAGAATGAGGAGGAAATAA

Upstream 100 bases:

>100_bases
TTTCTGCGGCAGCAATGACCTATATCGCTTCTATGGCGATGGCCATGCTTCAGCTGTTGAGAATGATTTTCATTGCCGGG
TTGTTTGGACGCAGAGACTG

Downstream 100 bases:

>100_bases
AGGGATGCAGTTGCTGGAGATGACACTGGATGAACTAAGAAAAGTTCTTGTGGATGAAGGTTATGAAAAATATAGAGCTT
CTCAGATATTCGATTGGATC

Product: NusB/RsmB/TIM44

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MNDPRQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLKKPEKLPAPVMNALRLG
VTQLFYMDSVPEFAAIHSSVELLKAKSFKKLVNAVLRKISKLETPLPEQPIWLKYSHPKWLVDYWEEIEWINPLEELLSY
NQQPPLQVYSIPKGEYHLLDEKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEYFRCPVIKPENSSLALLSEKP
WLFHTISKEELLKSANELKKELSNRIANIEEFVYLSNTLTLEENTQLLAPLKEFVPVPLDDFMIRYNLRGTWDGYGYWLL
PPNSPRPGYIARMRRK

Sequences:

>Translated_336_residues
MNDPRQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLKKPEKLPAPVMNALRLG
VTQLFYMDSVPEFAAIHSSVELLKAKSFKKLVNAVLRKISKLETPLPEQPIWLKYSHPKWLVDYWEEIEWINPLEELLSY
NQQPPLQVYSIPKGEYHLLDEKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEYFRCPVIKPENSSLALLSEKP
WLFHTISKEELLKSANELKKELSNRIANIEEFVYLSNTLTLEENTQLLAPLKEFVPVPLDDFMIRYNLRGTWDGYGYWLL
PPNSPRPGYIARMRRK
>Mature_336_residues
MNDPRQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLKKPEKLPAPVMNALRLG
VTQLFYMDSVPEFAAIHSSVELLKAKSFKKLVNAVLRKISKLETPLPEQPIWLKYSHPKWLVDYWEEIEWINPLEELLSY
NQQPPLQVYSIPKGEYHLLDEKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEYFRCPVIKPENSSLALLSEKP
WLFHTISKEELLKSANELKKELSNRIANIEEFVYLSNTLTLEENTQLLAPLKEFVPVPLDDFMIRYNLRGTWDGYGYWLL
PPNSPRPGYIARMRRK

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 39456; Mature: 39456

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDPRQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILN
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFLKKPEKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKSFKKLVNAVLRKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLETPLPEQPIWLKYSHPKWLVDYWEEIEWINPLEELLSYNQQPPLQVYSIPKGEYHLLD
HHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEC
EKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEYFRCPVIKPENSSLALLSEKP
CCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
WLFHTISKEELLKSANELKKELSNRIANIEEFVYLSNTLTLEENTQLLAPLKEFVPVPLD
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCHHHHHHHHHCCCCCH
DFMIRYNLRGTWDGYGYWLLPPNSPRPGYIARMRRK
HEEEEEECCEEECCCEEEEECCCCCCCCHHHHCCCC
>Mature Secondary Structure
MNDPRQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILN
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFLKKPEKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKSFKKLVNAVLRKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLETPLPEQPIWLKYSHPKWLVDYWEEIEWINPLEELLSYNQQPPLQVYSIPKGEYHLLD
HHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEC
EKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEYFRCPVIKPENSSLALLSEKP
CCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
WLFHTISKEELLKSANELKKELSNRIANIEEFVYLSNTLTLEENTQLLAPLKEFVPVPLD
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEECCCCHHHHHHHHHCCCCCH
DFMIRYNLRGTWDGYGYWLLPPNSPRPGYIARMRRK
HEEEEEECCEEECCCEEEEECCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]