Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 239618245

GI number: 239618245

Start: 2013887

End: 2015173

Strand: Reverse

Name: secY [H]

Synonym: Kole_1882

Alternate gene names: 239618245

Gene position: 2015173-2013887 (Counterclockwise)

Preceding gene: 239618246

Following gene: 239618244

Centisome position: 87.54

GC content: 45.22

Gene sequence:

>1287_bases
GTGTGGAATGCGCTTAAGAACGCCTTCAAAATCCCTGAACTCAGGGATAGGATTTTTTTCACACTCTTTGCGTTGGCCAT
CTTTCGTTTGGGTATATATATACCAATCCCAGGCATTAACATCAATGCCTGGGCTAGCTACTTTTCTGGTCTTTCTGAAG
GAGCTGCCGGAGGCTTCATCGGATTCTTCGATGTTTTCACCGGAGGTGCTCTTAAGAATTTCTCGCTTTTCGCTCTCAGT
GTTACACCATACATAAACGCATCAATCATGTTACAGTTACTCGCTTCTGTCGTTCCAAGTCTCAAAGAGATGTTGAAAGA
GGGAGAAGAAGGAAGGAAAAAATATGCCCGGCTTACAAGGCGTTTGACCGTGTTTTTGGGCTCGCTCCAGGCTTTCCTTC
TTACACTTGCCCTTTCCAACAACCAAGGGCTCATCGCAACACCAAACAGAGCAATTTTTGTACTACTCGGAACGGTGTCT
CTCCTGGGTGGTACAATGTTCCTGCTCTGGCTCGGTGAACGTATAACAGAAAAGGGTATAGGTAACGGTATCTCTGTGCT
GATATTTGCTGGTATAGTTGCCAGGTATCCTCAATACATCGCTCAGGCAGCAGTGTCCCTTACTCCGCTGCAGTGGATTG
TCCTTATAGCTATCGCCGTATTAACAGTTGTTGCCGTTATCTATGTACAAATGGGTGAAAGAAGAATCGAAATACAGTAT
GCAAGGCGTGTATCTGGAAGGCGTGTTTTCGGCGGCGTTTCAACACATATTCCGATAAAAGTAAATCAGGGAGGCGTTAT
CCCGATAATCTTTGCGGCAGCAATAATGACGCTACCCCAGATGATTTCCAGTGTCCTACCAGAAGGGAACCTGCTTGGCA
GACTGTTTGCTTATTCCTCACCGTTGTACCTGACACTATACGGTCTGTTGGTGTTCTTCTTCACTTATTTCTATAGCACG
TTGGTCTTTGATGTTAAAGATGTTTCGAATAACATAAAGAACTACGGTGGTTATATTCCGGGAATTAGACCTGGATATCC
AACCGAACGATACATAAGCAGGGTTTTAACACGGGTTACCTTTATGGGGGCTATTTTCCTTGTTATCATTGCCCTGCTGC
CGTCTATCGTTCAGGGATTCATAGGAATTCAGATAGTCATTGGAGGTACATCCACGCTGATCGCTGTTGGTGTCGCTTTA
GACATCCTTCAGCAGATAGAATCCCACCTTATCGTTAGACACTACGAAGGATTCATCAAAAAGGGTAGACTGCGCGGGAG
GAGATGA

Upstream 100 bases:

>100_bases
GGAGAACTTACCAAAGCGTTGGTCGTTAAAGCTCATGCTTTCAGCAGGACCGCGAAAGAGAAGATCGAAGCTGTAGGTGG
CAAGGCTGAGGTGATTTGAC

Downstream 100 bases:

>100_bases
TACAAATGAACATTATTTTGCTCGGTCCTCCCGGTGCGGGTAAAGGAACCCAGGCAAAAAAAATTGCTATGAGATATGGA
ATCCCTCATATATCGACGGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MWNALKNAFKIPELRDRIFFTLFALAIFRLGIYIPIPGININAWASYFSGLSEGAAGGFIGFFDVFTGGALKNFSLFALS
VTPYINASIMLQLLASVVPSLKEMLKEGEEGRKKYARLTRRLTVFLGSLQAFLLTLALSNNQGLIATPNRAIFVLLGTVS
LLGGTMFLLWLGERITEKGIGNGISVLIFAGIVARYPQYIAQAAVSLTPLQWIVLIAIAVLTVVAVIYVQMGERRIEIQY
ARRVSGRRVFGGVSTHIPIKVNQGGVIPIIFAAAIMTLPQMISSVLPEGNLLGRLFAYSSPLYLTLYGLLVFFFTYFYST
LVFDVKDVSNNIKNYGGYIPGIRPGYPTERYISRVLTRVTFMGAIFLVIIALLPSIVQGFIGIQIVIGGTSTLIAVGVAL
DILQQIESHLIVRHYEGFIKKGRLRGRR

Sequences:

>Translated_428_residues
MWNALKNAFKIPELRDRIFFTLFALAIFRLGIYIPIPGININAWASYFSGLSEGAAGGFIGFFDVFTGGALKNFSLFALS
VTPYINASIMLQLLASVVPSLKEMLKEGEEGRKKYARLTRRLTVFLGSLQAFLLTLALSNNQGLIATPNRAIFVLLGTVS
LLGGTMFLLWLGERITEKGIGNGISVLIFAGIVARYPQYIAQAAVSLTPLQWIVLIAIAVLTVVAVIYVQMGERRIEIQY
ARRVSGRRVFGGVSTHIPIKVNQGGVIPIIFAAAIMTLPQMISSVLPEGNLLGRLFAYSSPLYLTLYGLLVFFFTYFYST
LVFDVKDVSNNIKNYGGYIPGIRPGYPTERYISRVLTRVTFMGAIFLVIIALLPSIVQGFIGIQIVIGGTSTLIAVGVAL
DILQQIESHLIVRHYEGFIKKGRLRGRR
>Mature_428_residues
MWNALKNAFKIPELRDRIFFTLFALAIFRLGIYIPIPGININAWASYFSGLSEGAAGGFIGFFDVFTGGALKNFSLFALS
VTPYINASIMLQLLASVVPSLKEMLKEGEEGRKKYARLTRRLTVFLGSLQAFLLTLALSNNQGLIATPNRAIFVLLGTVS
LLGGTMFLLWLGERITEKGIGNGISVLIFAGIVARYPQYIAQAAVSLTPLQWIVLIAIAVLTVVAVIYVQMGERRIEIQY
ARRVSGRRVFGGVSTHIPIKVNQGGVIPIIFAAAIMTLPQMISSVLPEGNLLGRLFAYSSPLYLTLYGLLVFFFTYFYST
LVFDVKDVSNNIKNYGGYIPGIRPGYPTERYISRVLTRVTFMGAIFLVIIALLPSIVQGFIGIQIVIGGTSTLIAVGVAL
DILQQIESHLIVRHYEGFIKKGRLRGRR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=428, Percent_Identity=42.2897196261682, Blast_Score=293, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47107; Mature: 47107

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNALKNAFKIPELRDRIFFTLFALAIFRLGIYIPIPGININAWASYFSGLSEGAAGGFI
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCHH
GFFDVFTGGALKNFSLFALSVTPYINASIMLQLLASVVPSLKEMLKEGEEGRKKYARLTR
HHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RLTVFLGSLQAFLLTLALSNNQGLIATPNRAIFVLLGTVSLLGGTMFLLWLGERITEKGI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNGISVLIFAGIVARYPQYIAQAAVSLTPLQWIVLIAIAVLTVVAVIYVQMGERRIEIQY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ARRVSGRRVFGGVSTHIPIKVNQGGVIPIIFAAAIMTLPQMISSVLPEGNLLGRLFAYSS
HHHCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PLYLTLYGLLVFFFTYFYSTLVFDVKDVSNNIKNYGGYIPGIRPGYPTERYISRVLTRVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
FMGAIFLVIIALLPSIVQGFIGIQIVIGGTSTLIAVGVALDILQQIESHLIVRHYEGFIK
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRLRGRR
HCCCCCCC
>Mature Secondary Structure
MWNALKNAFKIPELRDRIFFTLFALAIFRLGIYIPIPGININAWASYFSGLSEGAAGGFI
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCHH
GFFDVFTGGALKNFSLFALSVTPYINASIMLQLLASVVPSLKEMLKEGEEGRKKYARLTR
HHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RLTVFLGSLQAFLLTLALSNNQGLIATPNRAIFVLLGTVSLLGGTMFLLWLGERITEKGI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNGISVLIFAGIVARYPQYIAQAAVSLTPLQWIVLIAIAVLTVVAVIYVQMGERRIEIQY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
ARRVSGRRVFGGVSTHIPIKVNQGGVIPIIFAAAIMTLPQMISSVLPEGNLLGRLFAYSS
HHHCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PLYLTLYGLLVFFFTYFYSTLVFDVKDVSNNIKNYGGYIPGIRPGYPTERYISRVLTRVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
FMGAIFLVIIALLPSIVQGFIGIQIVIGGTSTLIAVGVALDILQQIESHLIVRHYEGFIK
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRLRGRR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]