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The map label for this gene is ydhY [C]

Identifier: 239618161

GI number: 239618161

Start: 1920987

End: 1922423

Strand: Direct

Name: ydhY [C]

Synonym: Kole_1794

Alternate gene names: 239618161

Gene position: 1920987-1922423 (Clockwise)

Preceding gene: 239618160

Following gene: 239618164

Centisome position: 83.44

GC content: 40.85

Gene sequence:

>1437_bases
ATGAGAAACGTAATAACAACAGAACTTACAAAACTTAGAAGGCAAATTTATATCAAACTGCTTCAGAAAATAATTTCGGG
TAAGTACAACGAGATTCCCAAGATATCGAAAGAAATAATCAAAGAGGGAAGCATCCCGCAAGGTCAAGATGTTTACAAAA
CAAAGATAACGATTGATGAAACAATCAAGATTATTCTCGGGACGGATTATTCTAAAACCAAAGATCTGGAGCTATATGAG
CTAATACCGGAAATGGAAGCGATACTCAAAGGTGAAAGTCCCTTAATGAACAAAAGCGGGAAAGTTATAAATATAATCAG
GGAAATATGTGATGGATGTCCACTACCGAGTTATCATATCACAGACATGTGCCGTAATTGTTCGGCGAAATACTGTATAA
ATAGCTGTCCGAGAAATGCCATTCCAATTGTTGACGGAAAACCAAAAATAGATTCGGAAAAATGTGTCGGTTGTGGACTC
TGTGCGAAGAACTGTCCTTATGGTGCCATAATAAAAATTCAACGCCCGTGTGTTTCAGCATGTGCCGTTGGCGCTACATA
CTCAGATGAAAATGGCTTTGTTTTAATTGACGATGAAAAATGCGTTCAGTGTGGAGAATGTGCGGTAGCATGTCCCTTCG
GGGCAATAGTTGAAAGCTCTTCGATCGGTCAGGTCGCTGTCAGGCTTGGAAAAGAACCGATGGTGGCCATATTTGCCCCG
GCTTCAGTGGCACAGTTTGGACCAAGGGTCTCGCTTGGTCAATTCAAAAAAGCCCTCAAAGAAGTGGGCTTCGTTGATGC
TTTTGAGGTTGCCATTGGAGCGGATATGGTAGCCAAAGAAGAAGCGGAATATGTGGAAGAGAATCTTGAAAGGCTTGGGT
TCATAACCACTTCCTGTTGTCCGGCTTTCAAAAGAATGATAGAAACGAGATTTCCAGAACTTGTCGAACATATTTCGCCT
TCCCTTTCTCCAATGCACATGCTTGCTAAAAAGATTAAGGAAGACTATCCAAACGCCAAGGTTGTTTTTATAGGACCATG
TATAGCAAAGAAATATGAAGTTACCCTTCAACCATATACCGATTATGCACTGACATATGAAGAAATTGCCTCCATATTTG
CGGTTAAAGGGATAGAACCAGCAAATGTAGAAGAGGAAGAACTCAATAACGCAACTCCTTATGGAAGACTGTTTGCTACC
TCTGGCGGAGTGGCTGAAGCAGTTAAAAGCTTCGCAAACAAAGAGTTCGAAACAGTTGTCTGTTCAGGGTTAAAAGAGTG
CATACAAACATTAGAAAAAGCAAAAAAGGGCGAAGTAAAAGGATTAATTGAAGGAATGAGCTGTGAAGGTGGCTGTATTT
CTGGAACAAGAGTGATGGTAAATCCTCGAATCGCAATGTCAAACCTGAAAAGGCTCTTCAAAGTTGAGGAAACTTGA

Upstream 100 bases:

>100_bases
GCCATGTCGGGAAAAAGCCTCCAATAATAGAAATAAATGGTCAGGTATATGAGAATGTCACTGTTGAGAGCGTCTACCAT
ATATTGAAAGAGGTGGACAA

Downstream 100 bases:

>100_bases
TTATTTTACTTTCAGGATAATTTACAAAAAGGCTGGCATACTTGGCGGATGTCAGCCTTTCTATTTTTAAGACGAAGGGT
CATTTTAAAGAAATTAACGA

Product: Ferredoxin hydrogenase

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MRNVITTELTKLRRQIYIKLLQKIISGKYNEIPKISKEIIKEGSIPQGQDVYKTKITIDETIKIILGTDYSKTKDLELYE
LIPEMEAILKGESPLMNKSGKVINIIREICDGCPLPSYHITDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGL
CAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIGQVAVRLGKEPMVAIFAP
ASVAQFGPRVSLGQFKKALKEVGFVDAFEVAIGADMVAKEEAEYVEENLERLGFITTSCCPAFKRMIETRFPELVEHISP
SLSPMHMLAKKIKEDYPNAKVVFIGPCIAKKYEVTLQPYTDYALTYEEIASIFAVKGIEPANVEEEELNNATPYGRLFAT
SGGVAEAVKSFANKEFETVVCSGLKECIQTLEKAKKGEVKGLIEGMSCEGGCISGTRVMVNPRIAMSNLKRLFKVEET

Sequences:

>Translated_478_residues
MRNVITTELTKLRRQIYIKLLQKIISGKYNEIPKISKEIIKEGSIPQGQDVYKTKITIDETIKIILGTDYSKTKDLELYE
LIPEMEAILKGESPLMNKSGKVINIIREICDGCPLPSYHITDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGL
CAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIGQVAVRLGKEPMVAIFAP
ASVAQFGPRVSLGQFKKALKEVGFVDAFEVAIGADMVAKEEAEYVEENLERLGFITTSCCPAFKRMIETRFPELVEHISP
SLSPMHMLAKKIKEDYPNAKVVFIGPCIAKKYEVTLQPYTDYALTYEEIASIFAVKGIEPANVEEEELNNATPYGRLFAT
SGGVAEAVKSFANKEFETVVCSGLKECIQTLEKAKKGEVKGLIEGMSCEGGCISGTRVMVNPRIAMSNLKRLFKVEET
>Mature_478_residues
MRNVITTELTKLRRQIYIKLLQKIISGKYNEIPKISKEIIKEGSIPQGQDVYKTKITIDETIKIILGTDYSKTKDLELYE
LIPEMEAILKGESPLMNKSGKVINIIREICDGCPLPSYHITDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGL
CAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIGQVAVRLGKEPMVAIFAP
ASVAQFGPRVSLGQFKKALKEVGFVDAFEVAIGADMVAKEEAEYVEENLERLGFITTSCCPAFKRMIETRFPELVEHISP
SLSPMHMLAKKIKEDYPNAKVVFIGPCIAKKYEVTLQPYTDYALTYEEIASIFAVKGIEPANVEEEELNNATPYGRLFAT
SGGVAEAVKSFANKEFETVVCSGLKECIQTLEKAKKGEVKGLIEGMSCEGGCISGTRVMVNPRIAMSNLKRLFKVEET

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 52468; Mature: 52468

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00018 EF_HAND_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNVITTELTKLRRQIYIKLLQKIISGKYNEIPKISKEIIKEGSIPQGQDVYKTKITIDE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEHHH
TIKIILGTDYSKTKDLELYELIPEMEAILKGESPLMNKSGKVINIIREICDGCPLPSYHI
EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
TDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGLCAKNCPYGAIIKIQRPCVSA
HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEECCHHHHH
CAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIGQVAVRLGKEPMVAIFAP
HHCCCEEECCCCEEEECCHHHHHHCCEEEECCCHHHHCCCCHHHHHHHCCCCCEEEEECC
ASVAQFGPRVSLGQFKKALKEVGFVDAFEVAIGADMVAKEEAEYVEENLERLGFITTSCC
HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
PAFKRMIETRFPELVEHISPSLSPMHMLAKKIKEDYPNAKVVFIGPCIAKKYEVTLQPYT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
DYALTYEEIASIFAVKGIEPANVEEEELNNATPYGRLFATSGGVAEAVKSFANKEFETVV
CHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHH
CSGLKECIQTLEKAKKGEVKGLIEGMSCEGGCISGTRVMVNPRIAMSNLKRLFKVEET
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRNVITTELTKLRRQIYIKLLQKIISGKYNEIPKISKEIIKEGSIPQGQDVYKTKITIDE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEHHH
TIKIILGTDYSKTKDLELYELIPEMEAILKGESPLMNKSGKVINIIREICDGCPLPSYHI
EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
TDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGLCAKNCPYGAIIKIQRPCVSA
HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEECCHHHHH
CAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIGQVAVRLGKEPMVAIFAP
HHCCCEEECCCCEEEECCHHHHHHCCEEEECCCHHHHCCCCHHHHHHHCCCCCEEEEECC
ASVAQFGPRVSLGQFKKALKEVGFVDAFEVAIGADMVAKEEAEYVEENLERLGFITTSCC
HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
PAFKRMIETRFPELVEHISPSLSPMHMLAKKIKEDYPNAKVVFIGPCIAKKYEVTLQPYT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
DYALTYEEIASIFAVKGIEPANVEEEELNNATPYGRLFATSGGVAEAVKSFANKEFETVV
CHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHH
CSGLKECIQTLEKAKKGEVKGLIEGMSCEGGCISGTRVMVNPRIAMSNLKRLFKVEET
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]