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The map label for this gene is ybeY [C]

Identifier: 239618150

GI number: 239618150

Start: 1913406

End: 1913843

Strand: Direct

Name: ybeY [C]

Synonym: Kole_1783

Alternate gene names: 239618150

Gene position: 1913406-1913843 (Clockwise)

Preceding gene: 239618149

Following gene: 239618151

Centisome position: 83.11

GC content: 36.3

Gene sequence:

>438_bases
ATGAAAATAATCATAAATAATGCTACAAGCAAGGAAGTTGATACAGACAGATTAAAAGAATTGATCGTGAAAATATTGGA
AAGTGAATTGGACGAATTACCAGATTCAACTTTGAATGTATTGCTCACAACTGATGAAGAGATGACTTATTACAACGAAA
CTTACAGGCATAAAAAGGGTCCAACGGATGTTCTTTCCTTCGAATACGGACTGGATGATCCAGAAGCGGTAGGAGATATA
GTGATTTCTCTGGAAACGATAGAGAAGCAGGCAAAAGAGTTCGGGAACACCTTTCAGGAAGAGCTTTCACTTATGCTTAT
ACACGGGGTTTTGCATATACTTGGTTACGATCATGAAGGAGATGAAGAAGAGGCAAAAATAATGTTTGAAAAACAGGAAG
ACTACTTCAATAAATACGGTAAGAACATCTCTATATAA

Upstream 100 bases:

>100_bases
CTTGAAAAGATCATAGAAGCTTTTACTCGAGTCCTCATAAGTATGAGTCAGGCAAGGATAGAATATCCAAAAGAGAAGGT
TGAAAAGGTGGTAAGAATCA

Downstream 100 bases:

>100_bases
AACAGCTAAGTAGTTCGAAGGAGGGATAATCTTGTCAGTAGTACGTCCATTTAGAGCAGTAAGACCAAAAGCCGAGCTCG
TTGAAAAAGTGAACTGTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKIIINNATSKEVDTDRLKELIVKILESELDELPDSTLNVLLTTDEEMTYYNETYRHKKGPTDVLSFEYGLDDPEAVGDI
VISLETIEKQAKEFGNTFQEELSLMLIHGVLHILGYDHEGDEEEAKIMFEKQEDYFNKYGKNISI

Sequences:

>Translated_145_residues
MKIIINNATSKEVDTDRLKELIVKILESELDELPDSTLNVLLTTDEEMTYYNETYRHKKGPTDVLSFEYGLDDPEAVGDI
VISLETIEKQAKEFGNTFQEELSLMLIHGVLHILGYDHEGDEEEAKIMFEKQEDYFNKYGKNISI
>Mature_145_residues
MKIIINNATSKEVDTDRLKELIVKILESELDELPDSTLNVLLTTDEEMTYYNETYRHKKGPTDVLSFEYGLDDPEAVGDI
VISLETIEKQAKEFGNTFQEELSLMLIHGVLHILGYDHEGDEEEAKIMFEKQEDYFNKYGKNISI

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=70, Percent_Identity=42.8571428571429, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 16724; Mature: 16724

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIINNATSKEVDTDRLKELIVKILESELDELPDSTLNVLLTTDEEMTYYNETYRHKKG
CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCC
PTDVLSFEYGLDDPEAVGDIVISLETIEKQAKEFGNTFQEELSLMLIHGVLHILGYDHEG
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DEEEAKIMFEKQEDYFNKYGKNISI
CCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKIIINNATSKEVDTDRLKELIVKILESELDELPDSTLNVLLTTDEEMTYYNETYRHKKG
CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCC
PTDVLSFEYGLDDPEAVGDIVISLETIEKQAKEFGNTFQEELSLMLIHGVLHILGYDHEG
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DEEEAKIMFEKQEDYFNKYGKNISI
CCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA