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The map label for this gene is degT [H]

Identifier: 239618009

GI number: 239618009

Start: 1757343

End: 1758608

Strand: Direct

Name: degT [H]

Synonym: Kole_1637

Alternate gene names: 239618009

Gene position: 1757343-1758608 (Clockwise)

Preceding gene: 239618008

Following gene: 239618010

Centisome position: 76.34

GC content: 41.63

Gene sequence:

>1266_bases
ATGAAAGTACCGCTGTTTGATATCATAAGACAGTATGAAAAACTAAGGCGTGAAATCCTGGAAGCAATCGACAGCGTGAT
AAGTTCTGGAAGAGTGATTCTTGGAGAAAACGTGCGAAAACTTGAAGAGGAAATTGCAGAATTTGCTGGAGTAAGGCATG
GAATTGGTGTTGCTAATGGCTCAGACGCCCTTTATATCGCCCTTAAAGCCCTTGGAATTGGTGAAGGAGATTATGTCATA
ACGACACCATATACCTTTTTTGCTACGGCAAGTTGTATAACGCGTAATGGGGCTACTCCTATCTTCGCAGATATCGATCC
TGAAACTTTTAATATTAACCTTGATCTGGTGGAAGAGATTCTCAATTCTCATCCCCAGAGGGAAAAAATCAAGGCGTTGA
TTCCTGTACATTTGTTTGGCCAAACTGTCAATCTGGAAAGATTGGAATATATCAGGCAAAAGTATGGAATCAAAATACTT
GAGGACTGCGCCCAGTCTATAGGATCTACATGGACATATTCTGATGGTACTGTAAAGAAAAGTGGTTCAGTAGGAGATGC
CGCAATCTTTTCTTTCTTTCCTACGAAGAATCTTGGGGCTTACGGCGATGGCGGAATGATCATTACAAACAATGATGAAA
TAGCAGAATTCTGCAGAAAATTCAGAGTGCATGGCTCGAAGGTCAAATACCACCACGACGTTGTTGGAATAAATTCCAGG
CTTGACGAAATACAGGCAGCTGTACTAAGGGTTAAATTAAAGTATCTTGGTGAATACATCGAGAAGAGAAGAAAAATTGC
GAAGTGGTATGGGGAAGAATTCGGCAGAAAAGCGTTAGTTGTTCGAGAACCGAGAACCGAGAACCGAGAGAGGAAGAACC
GAGAATCTGAGAATCACAGAACACGAGAGTTCAGTAATTCTTTTTCTCGGACTCTCGGACTCTCGGACTCTCGGATTTTT
ATAAAGATCCCCTCCGTTCCTTCGGATAATTCCCACGTTTTTCACCAGTATGTTATTAGAGTTGGAAACGGTCAAAGAGA
TGCTCTAAGAGAGTTCTTGAGAGAAAGAGGCATAGGAACTTCGGTGTATTATCCCATGGGTCTTCATCAGCAAAAGTGTT
TTGCATATCTGAATATTCCAGAAGGTTCTTTACCTGAGACGGAAAGAGCTTCCAAAGAAGCTATAGCCCTTCCGATTTTT
CCAGAACTTCAAAAACAGGAAATCGAATATGTGGTTCAGACGATAGAGGACTTTTTCAAGGGGTGA

Upstream 100 bases:

>100_bases
TCAAAGAATGCTATTAGAAATGGCATGAAGAATATTATGGTCTTTGAAATTTCCAGCTCTGGAACGGTTTCTATAAGACG
AATAAATGGAGGGAGTACAA

Downstream 100 bases:

>100_bases
TATTATGAAAAAAAATATCTCGTTGGGAAAAAACGTTGTCATCGAGGAAGAAGTTGAAATAGGTAATAACTGTACAATAG
GTCATAATGTGGTGATTAGA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKVPLFDIIRQYEKLRREILEAIDSVISSGRVILGENVRKLEEEIAEFAGVRHGIGVANGSDALYIALKALGIGEGDYVI
TTPYTFFATASCITRNGATPIFADIDPETFNINLDLVEEILNSHPQREKIKALIPVHLFGQTVNLERLEYIRQKYGIKIL
EDCAQSIGSTWTYSDGTVKKSGSVGDAAIFSFFPTKNLGAYGDGGMIITNNDEIAEFCRKFRVHGSKVKYHHDVVGINSR
LDEIQAAVLRVKLKYLGEYIEKRRKIAKWYGEEFGRKALVVREPRTENRERKNRESENHRTREFSNSFSRTLGLSDSRIF
IKIPSVPSDNSHVFHQYVIRVGNGQRDALREFLRERGIGTSVYYPMGLHQQKCFAYLNIPEGSLPETERASKEAIALPIF
PELQKQEIEYVVQTIEDFFKG

Sequences:

>Translated_421_residues
MKVPLFDIIRQYEKLRREILEAIDSVISSGRVILGENVRKLEEEIAEFAGVRHGIGVANGSDALYIALKALGIGEGDYVI
TTPYTFFATASCITRNGATPIFADIDPETFNINLDLVEEILNSHPQREKIKALIPVHLFGQTVNLERLEYIRQKYGIKIL
EDCAQSIGSTWTYSDGTVKKSGSVGDAAIFSFFPTKNLGAYGDGGMIITNNDEIAEFCRKFRVHGSKVKYHHDVVGINSR
LDEIQAAVLRVKLKYLGEYIEKRRKIAKWYGEEFGRKALVVREPRTENRERKNRESENHRTREFSNSFSRTLGLSDSRIF
IKIPSVPSDNSHVFHQYVIRVGNGQRDALREFLRERGIGTSVYYPMGLHQQKCFAYLNIPEGSLPETERASKEAIALPIF
PELQKQEIEYVVQTIEDFFKG
>Mature_421_residues
MKVPLFDIIRQYEKLRREILEAIDSVISSGRVILGENVRKLEEEIAEFAGVRHGIGVANGSDALYIALKALGIGEGDYVI
TTPYTFFATASCITRNGATPIFADIDPETFNINLDLVEEILNSHPQREKIKALIPVHLFGQTVNLERLEYIRQKYGIKIL
EDCAQSIGSTWTYSDGTVKKSGSVGDAAIFSFFPTKNLGAYGDGGMIITNNDEIAEFCRKFRVHGSKVKYHHDVVGINSR
LDEIQAAVLRVKLKYLGEYIEKRRKIAKWYGEEFGRKALVVREPRTENRERKNRESENHRTREFSNSFSRTLGLSDSRIF
IKIPSVPSDNSHVFHQYVIRVGNGQRDALREFLRERGIGTSVYYPMGLHQQKCFAYLNIPEGSLPETERASKEAIALPIF
PELQKQEIEYVVQTIEDFFKG

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=417, Percent_Identity=28.537170263789, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI2367285, Length=412, Percent_Identity=23.3009708737864, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 47821; Mature: 47821

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVPLFDIIRQYEKLRREILEAIDSVISSGRVILGENVRKLEEEIAEFAGVRHGIGVANG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCHHCCCCCCC
SDALYIALKALGIGEGDYVITTPYTFFATASCITRNGATPIFADIDPETFNINLDLVEEI
CCCEEEEEEHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHH
LNSHPQREKIKALIPVHLFGQTVNLERLEYIRQKYGIKILEDCAQSIGSTWTYSDGTVKK
HHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCEEC
SGSVGDAAIFSFFPTKNLGAYGDGGMIITNNDEIAEFCRKFRVHGSKVKYHHDVVGINSR
CCCCCCHHHHEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCEEECHHH
LDEIQAAVLRVKLKYLGEYIEKRRKIAKWYGEEFGRKALVVREPRTENRERKNRESENHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHH
TREFSNSFSRTLGLSDSRIFIKIPSVPSDNSHVFHQYVIRVGNGQRDALREFLRERGIGT
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
SVYYPMGLHQQKCFAYLNIPEGSLPETERASKEAIALPIFPELQKQEIEYVVQTIEDFFK
EEEECCCCCCCCEEEEEECCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure
MKVPLFDIIRQYEKLRREILEAIDSVISSGRVILGENVRKLEEEIAEFAGVRHGIGVANG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCHHCCCCCCC
SDALYIALKALGIGEGDYVITTPYTFFATASCITRNGATPIFADIDPETFNINLDLVEEI
CCCEEEEEEHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHH
LNSHPQREKIKALIPVHLFGQTVNLERLEYIRQKYGIKILEDCAQSIGSTWTYSDGTVKK
HHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCEEC
SGSVGDAAIFSFFPTKNLGAYGDGGMIITNNDEIAEFCRKFRVHGSKVKYHHDVVGINSR
CCCCCCHHHHEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCEEECHHH
LDEIQAAVLRVKLKYLGEYIEKRRKIAKWYGEEFGRKALVVREPRTENRERKNRESENHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHH
TREFSNSFSRTLGLSDSRIFIKIPSVPSDNSHVFHQYVIRVGNGQRDALREFLRERGIGT
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
SVYYPMGLHQQKCFAYLNIPEGSLPETERASKEAIALPIFPELQKQEIEYVVQTIEDFFK
EEEECCCCCCCCEEEEEECCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]