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The map label for this gene is secD [H]

Identifier: 239617983

GI number: 239617983

Start: 1727571

End: 1729076

Strand: Direct

Name: secD [H]

Synonym: Kole_1611

Alternate gene names: 239617983

Gene position: 1727571-1729076 (Clockwise)

Preceding gene: 239617982

Following gene: 239617984

Centisome position: 75.04

GC content: 44.95

Gene sequence:

>1506_bases
ATGAGAGCAAACCAAAAACGTCTCATTGTTGTTGTAATTGTTATTGTTCTCGCGCTTCTTCCCCTGGTTATACCTCGTGG
AGAAACGGCTGGAGGTTCTTTTTTGTCGCTAATTACTTCCAACATTCGATTGGGTCTTGACATCAAAGGTGGAGCCCTGC
TTGAGTATGCTCTGGTAACTGACACTCCTAAAGAAGAGCAAAGCACAATAGCCGATAGAGTTGTGGAAGTGCTTAGAAAG
AGGCTTGATGCTGCCGGGTTCACTGAAGCGACCGTTGAGAAGGTTGTTGCAAGTATTAGCTTTGGCGAAGAGGTGCCTTC
TGTTAGGGTGCGTGTGCAGATACCAGGGATAACCGATATCGAAAAAGCCGAAAAACTCGTTGGGCAAACGGGTAAATTGT
ACTTTGCTGATGTTCTTGCCATCGAGACGTCAGATGCAACACCAGGTATGCCTTCTGGAATGGCTTATGAGATAAGCAAA
CTCAAACTTCAAGGAGTCGAGCCTTTCTGGACCAAAAGCTTTCATTATGGAAAGATCGAAAACGGTGTTGAAAACAGGAT
ATGGTATTATATAAGTCCTAAAATAAACATCGGTGGAAGATATGTAGAGCTCGATGGAAGTACCATTACTGATGCGAAGG
CACTGGTAAATCCGAGACCACAACCCGGTCAAGGTAAGTTCATGGTTTCTCTGGAGTTCAATAGAGACGGTAGAGATACC
TTCAGAGATATCACAGCTTCCAAATCGGGACTTCCCGAGAACGATATAAAGAAAAGACTGGCGATTGTTCTAGATGATAA
AGTTATCATTGCGCCGATCGTCTCTTCAACGATTTCCGATGGAAAGGCAGTTATTGAAGGACTTCAAACGATCGATGAAG
CCAGGGAGATCGCCATACTTGTCAGCAGTGGAAACCTGCCAGTTGAGCTTAAACCTTTCAACAAAAGGGTACTTTCTCCT
ACTCTGGGTAAGGACATAATAACATCAGCCCTCTGGGCCGGGCTTGCTGGCCTGGTTATCATTATGATTTACATGGTGCT
TGTCTATGGCTTGATGGGACTCGTTGCTGATGTTGCTTTGCTTTATAACTCGCTCCTTCTCTTCGGAATGCTTGCGTTGA
CCGGATCGATCCTGACGCTTCCTGGTATTGCGGGTATCATCCTTACAATAGGTATGACCGTGGATGGAAACATTCTCATA
TTTGAGAGAATCAAAGAAGAACTCAGAGTTGGAAAAACACCTGAAAATGCTGTTGATAGTGCTTTCAACAAGGTGTTCTG
GACGATATTTGATGCGAATCTGACCACAATTCTTGCCGGTCTCGTGCTTCTTTACTTTGGAACGGGAACAGTTAAGGGAT
TTGCTGTAACGCTCATAATTGGAGTTTTAGGCGCAATGTTTACTAACCTGGTTGCCTCCAGAACAATGCTCGTTGGAATG
GCCGGAAGCATCAATGCTGCACGCTACGTAAAGGCTACCGGCGGTGAAGGGAGCGATAAAAGATGA

Upstream 100 bases:

>100_bases
GATCCTGGAATTCAGTAAGAAAGCAGGAGTAAGGGTTCATAAAAAAGTATTTCTGATATTTCGAAAGGGGGTGCTCTGTC
CGACTATCGGACAAAACAAT

Downstream 100 bases:

>100_bases
GATACAACTTTGATTTTGTTGGTAAAAGAAAGGGATTCCTTACTCTATCATTGGTGCTTGTAGCATTGACGCTCGTCATG
GTGTTCACTAAGGGTTTTAA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MRANQKRLIVVVIVIVLALLPLVIPRGETAGGSFLSLITSNIRLGLDIKGGALLEYALVTDTPKEEQSTIADRVVEVLRK
RLDAAGFTEATVEKVVASISFGEEVPSVRVRVQIPGITDIEKAEKLVGQTGKLYFADVLAIETSDATPGMPSGMAYEISK
LKLQGVEPFWTKSFHYGKIENGVENRIWYYISPKINIGGRYVELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDT
FRDITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAILVSSGNLPVELKPFNKRVLSP
TLGKDIITSALWAGLAGLVIIMIYMVLVYGLMGLVADVALLYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILI
FERIKEELRVGKTPENAVDSAFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLVGM
AGSINAARYVKATGGEGSDKR

Sequences:

>Translated_501_residues
MRANQKRLIVVVIVIVLALLPLVIPRGETAGGSFLSLITSNIRLGLDIKGGALLEYALVTDTPKEEQSTIADRVVEVLRK
RLDAAGFTEATVEKVVASISFGEEVPSVRVRVQIPGITDIEKAEKLVGQTGKLYFADVLAIETSDATPGMPSGMAYEISK
LKLQGVEPFWTKSFHYGKIENGVENRIWYYISPKINIGGRYVELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDT
FRDITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAILVSSGNLPVELKPFNKRVLSP
TLGKDIITSALWAGLAGLVIIMIYMVLVYGLMGLVADVALLYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILI
FERIKEELRVGKTPENAVDSAFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLVGM
AGSINAARYVKATGGEGSDKR
>Mature_501_residues
MRANQKRLIVVVIVIVLALLPLVIPRGETAGGSFLSLITSNIRLGLDIKGGALLEYALVTDTPKEEQSTIADRVVEVLRK
RLDAAGFTEATVEKVVASISFGEEVPSVRVRVQIPGITDIEKAEKLVGQTGKLYFADVLAIETSDATPGMPSGMAYEISK
LKLQGVEPFWTKSFHYGKIENGVENRIWYYISPKINIGGRYVELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDT
FRDITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAILVSSGNLPVELKPFNKRVLSP
TLGKDIITSALWAGLAGLVIIMIYMVLVYGLMGLVADVALLYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILI
FERIKEELRVGKTPENAVDSAFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLVGM
AGSINAARYVKATGGEGSDKR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=417, Percent_Identity=30.4556354916067, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 53904; Mature: 53904

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRANQKRLIVVVIVIVLALLPLVIPRGETAGGSFLSLITSNIRLGLDIKGGALLEYALVT
CCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEEEEC
DTPKEEQSTIADRVVEVLRKRLDAAGFTEATVEKVVASISFGEEVPSVRVRVQIPGITDI
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
EKAEKLVGQTGKLYFADVLAIETSDATPGMPSGMAYEISKLKLQGVEPFWTKSFHYGKIE
HHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEHEEECCCCCHHHCCCCCCCCC
NGVENRIWYYISPKINIGGRYVELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDT
CCCCCCEEEEECCEEECCCEEEEECCCEECCHHHHCCCCCCCCCCCEEEEEEECCCCHHH
FRDITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAIL
HHHHHCCCCCCCHHHHHHHHEEEECCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
VSSGNLPVELKPFNKRVLSPTLGKDIITSALWAGLAGLVIIMIYMVLVYGLMGLVADVAL
EECCCCCEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILIFERIKEELRVGKTPENAVDS
HHHHHHHHHHHHHHCCHHHHCHHHHHHHEECEEECCCEEEHHHHHHHHHCCCCCCHHHHH
AFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLVGM
HHHHHEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
AGSINAARYVKATGGEGSDKR
CCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MRANQKRLIVVVIVIVLALLPLVIPRGETAGGSFLSLITSNIRLGLDIKGGALLEYALVT
CCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCEEEEEECCCCEEEEEEEC
DTPKEEQSTIADRVVEVLRKRLDAAGFTEATVEKVVASISFGEEVPSVRVRVQIPGITDI
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
EKAEKLVGQTGKLYFADVLAIETSDATPGMPSGMAYEISKLKLQGVEPFWTKSFHYGKIE
HHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEHEEECCCCCHHHCCCCCCCCC
NGVENRIWYYISPKINIGGRYVELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDT
CCCCCCEEEEECCEEECCCEEEEECCCEECCHHHHCCCCCCCCCCCEEEEEEECCCCHHH
FRDITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAIL
HHHHHCCCCCCCHHHHHHHHEEEECCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
VSSGNLPVELKPFNKRVLSPTLGKDIITSALWAGLAGLVIIMIYMVLVYGLMGLVADVAL
EECCCCCEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILIFERIKEELRVGKTPENAVDS
HHHHHHHHHHHHHHCCHHHHCHHHHHHHEECEEECCCEEEHHHHHHHHHCCCCCCHHHHH
AFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLVGM
HHHHHEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
AGSINAARYVKATGGEGSDKR
CCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]