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The map label for this gene is 239617776

Identifier: 239617776

GI number: 239617776

Start: 1492366

End: 1493076

Strand: Reverse

Name: 239617776

Synonym: Kole_1401

Alternate gene names: NA

Gene position: 1493076-1492366 (Counterclockwise)

Preceding gene: 239617778

Following gene: 239617775

Centisome position: 64.86

GC content: 42.05

Gene sequence:

>711_bases
ATGTTCCCTTTAAGAGACACAATTCCCAGTGAGAAAAAACCTTATGTGATGTGGACGATTATTCTGATAAATGTTGGGGT
TTTTCTATACGAGTTACTCCTTTCAGACGGTGAACTTCTTCTCTTTATGTACAGACACGGTCTCGTTCCTTCAAGATACA
CCAAAGGTTACGCTACTTTGGAGCCTTATTACACATATGTCTTAAAGCTAAATCGATTTAACCTTTTTCCCTTCGTTACC
TCGATTTTTTTACACGGAGGTTGGACCCATATAATCGGAAATATGTGGACACTGTGGGTCTTCGGAGATAATGTGGAAGA
TAGATTAGGACACTTCAGATTTCTACTCTACTACCTCTCATGGGGAATCGCTGCCAACCTGTTTCAATTTCTGGTGGCGC
CCATATCATCTACCCCCATCATCGGCGCTTCAGGCGCAATCGCTGGTGTTATGGGAGCTTATCTGTTCTTTTTCCCATGG
AGCAGGATCCTCACCTTTATTCCTATCTTCATAATCCCTTTCATAATCGAAATACCGGCATTCATCTTCCTAATCATATG
GTTTACAATACAGTTTTTCAACGGGACCCTATCAATAGTCGGTGCTAACTTCTCTGGAGTTGCATGGTGGGCACACATTG
GAGGCTTCCTTGTGGGTCTTTACATGGCCAAACGATTTGAGACAAAATATCCAGGATACTGGTATAGATAA

Upstream 100 bases:

>100_bases
TACGGGGGCACAACCGCTGGTAATTATATCATTACCCCCTTCGCATTTCAACTGTCAATTTGGTAGAATCTATTGATAAC
TCAGTTGGAGGCGATAGTAG

Downstream 100 bases:

>100_bases
TTTAAGCTGGAGGGATTGAAAAATGAAGAAACAACCCATTGTAGCTCTAGAATCAACGGTAATAGCTCATGGCTTACCAT
GGCCAACTAATTTTGAAACA

Product: Rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MFPLRDTIPSEKKPYVMWTIILINVGVFLYELLLSDGELLLFMYRHGLVPSRYTKGYATLEPYYTYVLKLNRFNLFPFVT
SIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLSWGIAANLFQFLVAPISSTPIIGASGAIAGVMGAYLFFFPW
SRILTFIPIFIIPFIIEIPAFIFLIIWFTIQFFNGTLSIVGANFSGVAWWAHIGGFLVGLYMAKRFETKYPGYWYR

Sequences:

>Translated_236_residues
MFPLRDTIPSEKKPYVMWTIILINVGVFLYELLLSDGELLLFMYRHGLVPSRYTKGYATLEPYYTYVLKLNRFNLFPFVT
SIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLSWGIAANLFQFLVAPISSTPIIGASGAIAGVMGAYLFFFPW
SRILTFIPIFIIPFIIEIPAFIFLIIWFTIQFFNGTLSIVGANFSGVAWWAHIGGFLVGLYMAKRFETKYPGYWYR
>Mature_236_residues
MFPLRDTIPSEKKPYVMWTIILINVGVFLYELLLSDGELLLFMYRHGLVPSRYTKGYATLEPYYTYVLKLNRFNLFPFVT
SIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLSWGIAANLFQFLVAPISSTPIIGASGAIAGVMGAYLFFFPW
SRILTFIPIFIIPFIIEIPAFIFLIIWFTIQFFNGTLSIVGANFSGVAWWAHIGGFLVGLYMAKRFETKYPGYWYR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27392; Mature: 27392

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPLRDTIPSEKKPYVMWTIILINVGVFLYELLLSDGELLLFMYRHGLVPSRYTKGYATL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCCCH
EPYYTYVLKLNRFNLFPFVTSIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLS
HHHHHHHEEECCCCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHH
WGIAANLFQFLVAPISSTPIIGASGAIAGVMGAYLFFFPWSRILTFIPIFIIPFIIEIPA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFLIIWFTIQFFNGTLSIVGANFSGVAWWAHIGGFLVGLYMAKRFETKYPGYWYR
HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFPLRDTIPSEKKPYVMWTIILINVGVFLYELLLSDGELLLFMYRHGLVPSRYTKGYATL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCCCH
EPYYTYVLKLNRFNLFPFVTSIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLS
HHHHHHHEEECCCCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHH
WGIAANLFQFLVAPISSTPIIGASGAIAGVMGAYLFFFPWSRILTFIPIFIIPFIIEIPA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFLIIWFTIQFFNGTLSIVGANFSGVAWWAHIGGFLVGLYMAKRFETKYPGYWYR
HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA