Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 239617716

GI number: 239617716

Start: 1418806

End: 1421103

Strand: Direct

Name: ydaM [H]

Synonym: Kole_1340

Alternate gene names: 239617716

Gene position: 1418806-1421103 (Clockwise)

Preceding gene: 239617715

Following gene: 239617717

Centisome position: 61.63

GC content: 40.08

Gene sequence:

>2298_bases
TTGAGCCGGAGAATTGTTCTTTTTCTTTTGATTTTTCTCCTGGGGGTAACGGTCATTGGAAGAACCATAAAGGTGGGTAT
ATATGAAAATAAGCCTCTTGTTTTTGTTGAAAATGGCGTTGCTAAAGGGGTATATATTGATATCCTTCAGGAGATTGCCC
GTAAAGAAAACTGGGAGCTTAGTTTTGTTCGAGGAAACTGGATAGAGTGTCTGGATAAGCTAAGAAACGGCGATATAGAT
ATACTTGTCGCAATAGCCCATACTCCCGAAAGGGAAGCGATCTATGATTTTAATAAAGAGGCCGTGTTTACTAATTGGGG
ACAGATATACTGTAGAAAGGGTTTTTCTCCAGAATCTGTTATTGATCTTGAAGGTAAGATGATCGCAGGGGTTAGTGGAG
ACATTTATTACCAGCATTTCTACGAGCTTCTTAAAAATTTCAACATTTCTGCTGATTTGGTGACTGTTGAGGAATATCAT
GAAGTCCTCTCGCTACTTGACCTTGGAGAAGTTGATGCTGGGGTTATTTCCAGGCTTTATGCTCAATTGAACGCTTCAAA
TTACAGGGTTAAAGAGACGGGCATTATTTTTTCACCTGTGGTGCTCAAGTTTGCTTTTACAAAGCATAAGCATAGAGACT
TAATAATAACTATAGACAAATATCTGAAGGAGTTCAAAGAAGACCCTGAATCAGTTTACTATGAATCTTTAGACAGGTGG
TTGAACATAGATGTTGTCGAAAGCACTTTTGTTATTCCACAGTGGTTAGTTGTTGCTCTTATTGTTTCTTCTATATTTAT
CACAATTTTTGCTGGAACTGCTTTTTTGCTCCAGAAGCGCGTGGATTTGAAAACGCGTGAATTGAGAGAGAGAAACATGG
AATTGGAAGAGTTATCTAAGAAATTGAAGAAGAGTGAGGAAAAATTCAGACAATTAATTCAATCAATGGACGATGTTGTT
TTTGTTCTTGATGTTAACAAGAGGTTTGTTGAATTCTACGGCGAATGGTTCGAGAAATATGGGTTGGACCCCGAAAAACT
TGTAGGGAAAAAACCGTCAGCTGTGCTGGACAAGATCAATGGCGAGAGTATAGAAAAGGCCGCAGAGGTAGCTTTAGAGA
GTGGAAGTGCAACGGTAGAATGGATCGTAAAACGTGACGATGACAATAAAGACAACAAAAAAGATGAAGGTTCCAAAATT
TATTTGGGTGTTTCTCTTTCAGCTCTTCGTAATGGCAATGGTAAAGTGGTTGGAATAGTCGGTGTAGCGCGGGATATAAC
GGAGAAGGTGAAGAACAACGAGAAAATGCGGTACCTTAGTTTTCACGATGTTCTTACGGGTTTATACAATCGTGCCTTCT
TTGAAGAGGAGTTGAAGAGACTTGATTCCCACAGGCAGTTGCCCATAAGCCTGATTATGATAGATATAAATTGTCTCAAG
TTGACCAACGATATTTTTGGCCATCTTGAAGGAGATAGGGTAATAAAGGAAGTTGCCCAAGCTTTGAGAAGTTCGTGTAG
AAAGGAAGACATAATTGCTCGTTGGGGAGGGGATGAGTTTGTTATCCTCTTACCAAAGACCCCCTTTGAAGAGGTGAAAG
AGGTGGGCGAAAGAATAAGGCGAACGTGTAGGATTAAGATTGTCGATGATATTGAGTTAAATGTATCTCAGGGCATCGCA
ACAAAGGAAAAGTTTTCTCAAGATATGATGGATGTCTTGAGAGAAGCAGAGATGAGGATGTATGAGGAAAAGGTTGCTCT
TGATGTTCAGATAAAGAAAGCATTGTTGAGATACTTTAGAGAAAAGATAGCCCAAGGGCAAGGGGCAGTTAGCAGTGTTG
AATGCCTGGAGAAGATGAAAGAGATCGCAGAAAGGTTCGGTTACGCCGTTGGACTGGATAATGCAGAGATGAATAAATTA
CTTCTTCTGGTAGAGTACCATGATATAGGGATTGTTGCGCTGAAGAATCATTCTGAAAAAGGGTTGAATTACGAAAAGCA
TCCGGAGGTAGGGTACAAGATCGCTTTGAACTTCCCTGAGATTGCTCCGATAGCTGAGTACATACTTTATCATCATGAAC
GCTGGGATGGACAGGGTTATCCTAAGAAATTGCGTGGTAATGAAATCCCATTGCTTTCGAGGTTAGTATCTATACTCGAC
TTTTATGCGAAGGAAAAATGCAAAGATGGTGAACCCAAACAATCCGATGAGCGGATTATTTTAGAATTGGGAAAACGCGC
AGGTTCCGAATTTGATCCTGATTTGGTGAAACTCTTCACGAAGTTACTTCTTTTGTAG

Upstream 100 bases:

>100_bases
CCTCTTTTTTCAAAAAGGTGTTAGAGGTTTCATATTTTTTGCAGTGTGATATGATATAACTTTAATATAGTGTATGAAAC
TTAATAAGAGGGGGATTATT

Downstream 100 bases:

>100_bases
TGGAATTCGAAAAAAAGGAGTGATATTGTGTCAGCTGAAGTAGTATTGGGAGTTAAAAACCTACGCAAGTATTATGGACA
AGTGAAAGCAGTTAACGGGA

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 764

Protein sequence:

>765_residues
MSRRIVLFLLIFLLGVTVIGRTIKVGIYENKPLVFVENGVAKGVYIDILQEIARKENWELSFVRGNWIECLDKLRNGDID
ILVAIAHTPEREAIYDFNKEAVFTNWGQIYCRKGFSPESVIDLEGKMIAGVSGDIYYQHFYELLKNFNISADLVTVEEYH
EVLSLLDLGEVDAGVISRLYAQLNASNYRVKETGIIFSPVVLKFAFTKHKHRDLIITIDKYLKEFKEDPESVYYESLDRW
LNIDVVESTFVIPQWLVVALIVSSIFITIFAGTAFLLQKRVDLKTRELRERNMELEELSKKLKKSEEKFRQLIQSMDDVV
FVLDVNKRFVEFYGEWFEKYGLDPEKLVGKKPSAVLDKINGESIEKAAEVALESGSATVEWIVKRDDDNKDNKKDEGSKI
YLGVSLSALRNGNGKVVGIVGVARDITEKVKNNEKMRYLSFHDVLTGLYNRAFFEEELKRLDSHRQLPISLIMIDINCLK
LTNDIFGHLEGDRVIKEVAQALRSSCRKEDIIARWGGDEFVILLPKTPFEEVKEVGERIRRTCRIKIVDDIELNVSQGIA
TKEKFSQDMMDVLREAEMRMYEEKVALDVQIKKALLRYFREKIAQGQGAVSSVECLEKMKEIAERFGYAVGLDNAEMNKL
LLLVEYHDIGIVALKNHSEKGLNYEKHPEVGYKIALNFPEIAPIAEYILYHHERWDGQGYPKKLRGNEIPLLSRLVSILD
FYAKEKCKDGEPKQSDERIILELGKRAGSEFDPDLVKLFTKLLLL

Sequences:

>Translated_765_residues
MSRRIVLFLLIFLLGVTVIGRTIKVGIYENKPLVFVENGVAKGVYIDILQEIARKENWELSFVRGNWIECLDKLRNGDID
ILVAIAHTPEREAIYDFNKEAVFTNWGQIYCRKGFSPESVIDLEGKMIAGVSGDIYYQHFYELLKNFNISADLVTVEEYH
EVLSLLDLGEVDAGVISRLYAQLNASNYRVKETGIIFSPVVLKFAFTKHKHRDLIITIDKYLKEFKEDPESVYYESLDRW
LNIDVVESTFVIPQWLVVALIVSSIFITIFAGTAFLLQKRVDLKTRELRERNMELEELSKKLKKSEEKFRQLIQSMDDVV
FVLDVNKRFVEFYGEWFEKYGLDPEKLVGKKPSAVLDKINGESIEKAAEVALESGSATVEWIVKRDDDNKDNKKDEGSKI
YLGVSLSALRNGNGKVVGIVGVARDITEKVKNNEKMRYLSFHDVLTGLYNRAFFEEELKRLDSHRQLPISLIMIDINCLK
LTNDIFGHLEGDRVIKEVAQALRSSCRKEDIIARWGGDEFVILLPKTPFEEVKEVGERIRRTCRIKIVDDIELNVSQGIA
TKEKFSQDMMDVLREAEMRMYEEKVALDVQIKKALLRYFREKIAQGQGAVSSVECLEKMKEIAERFGYAVGLDNAEMNKL
LLLVEYHDIGIVALKNHSEKGLNYEKHPEVGYKIALNFPEIAPIAEYILYHHERWDGQGYPKKLRGNEIPLLSRLVSILD
FYAKEKCKDGEPKQSDERIILELGKRAGSEFDPDLVKLFTKLLLL
>Mature_764_residues
SRRIVLFLLIFLLGVTVIGRTIKVGIYENKPLVFVENGVAKGVYIDILQEIARKENWELSFVRGNWIECLDKLRNGDIDI
LVAIAHTPEREAIYDFNKEAVFTNWGQIYCRKGFSPESVIDLEGKMIAGVSGDIYYQHFYELLKNFNISADLVTVEEYHE
VLSLLDLGEVDAGVISRLYAQLNASNYRVKETGIIFSPVVLKFAFTKHKHRDLIITIDKYLKEFKEDPESVYYESLDRWL
NIDVVESTFVIPQWLVVALIVSSIFITIFAGTAFLLQKRVDLKTRELRERNMELEELSKKLKKSEEKFRQLIQSMDDVVF
VLDVNKRFVEFYGEWFEKYGLDPEKLVGKKPSAVLDKINGESIEKAAEVALESGSATVEWIVKRDDDNKDNKKDEGSKIY
LGVSLSALRNGNGKVVGIVGVARDITEKVKNNEKMRYLSFHDVLTGLYNRAFFEEELKRLDSHRQLPISLIMIDINCLKL
TNDIFGHLEGDRVIKEVAQALRSSCRKEDIIARWGGDEFVILLPKTPFEEVKEVGERIRRTCRIKIVDDIELNVSQGIAT
KEKFSQDMMDVLREAEMRMYEEKVALDVQIKKALLRYFREKIAQGQGAVSSVECLEKMKEIAERFGYAVGLDNAEMNKLL
LLVEYHDIGIVALKNHSEKGLNYEKHPEVGYKIALNFPEIAPIAEYILYHHERWDGQGYPKKLRGNEIPLLSRLVSILDF
YAKEKCKDGEPKQSDERIILELGKRAGSEFDPDLVKLFTKLLLL

Specific function: Unknown

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=150, Percent_Identity=36, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1788381, Length=312, Percent_Identity=26.6025641025641, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=35.8024691358025, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=29.1208791208791, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI145693134, Length=153, Percent_Identity=35.2941176470588, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=29.5180722891566, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081974, Length=146, Percent_Identity=37.6712328767123, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1787262, Length=153, Percent_Identity=32.0261437908497, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=146, Percent_Identity=32.8767123287671, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=33.5526315789474, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788085, Length=155, Percent_Identity=27.0967741935484, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 87960; Mature: 87829

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRIVLFLLIFLLGVTVIGRTIKVGIYENKPLVFVENGVAKGVYIDILQEIARKENWEL
CCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCEE
SFVRGNWIECLDKLRNGDIDILVAIAHTPEREAIYDFNKEAVFTNWGQIYCRKGFSPESV
EEECCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCEEECCCHHEEECCCCCCCE
IDLEGKMIAGVSGDIYYQHFYELLKNFNISADLVTVEEYHEVLSLLDLGEVDAGVISRLY
EECCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHH
AQLNASNYRVKETGIIFSPVVLKFAFTKHKHRDLIITIDKYLKEFKEDPESVYYESLDRW
HHHCCCCEEEEECCEEEHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHH
LNIDVVESTFVIPQWLVVALIVSSIFITIFAGTAFLLQKRVDLKTRELRERNMELEELSK
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
KLKKSEEKFRQLIQSMDDVVFVLDVNKRFVEFYGEWFEKYGLDPEKLVGKKPSAVLDKIN
HHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCC
GESIEKAAEVALESGSATVEWIVKRDDDNKDNKKDEGSKIYLGVSLSALRNGNGKVVGIV
CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHCCCCCCEEEEE
GVARDITEKVKNNEKMRYLSFHDVLTGLYNRAFFEEELKRLDSHRQLPISLIMIDINCLK
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHH
LTNDIFGHLEGDRVIKEVAQALRSSCRKEDIIARWGGDEFVILLPKTPFEEVKEVGERIR
HHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCEEEECCCEEEEEECCCCHHHHHHHHHHHH
RTCRIKIVDDIELNVSQGIATKEKFSQDMMDVLREAEMRMYEEKVALDVQIKKALLRYFR
HHEEEEEEECCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKIAQGQGAVSSVECLEKMKEIAERFGYAVGLDNAEMNKLLLLVEYHDIGIVALKNHSEK
HHHHCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEECCEEEEEEECCCCC
GLNYEKHPEVGYKIALNFPEIAPIAEYILYHHERWDGQGYPKKLRGNEIPLLSRLVSILD
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHH
FYAKEKCKDGEPKQSDERIILELGKRAGSEFDPDLVKLFTKLLLL
HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SRRIVLFLLIFLLGVTVIGRTIKVGIYENKPLVFVENGVAKGVYIDILQEIARKENWEL
CCHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCEE
SFVRGNWIECLDKLRNGDIDILVAIAHTPEREAIYDFNKEAVFTNWGQIYCRKGFSPESV
EEECCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCEEECCCHHEEECCCCCCCE
IDLEGKMIAGVSGDIYYQHFYELLKNFNISADLVTVEEYHEVLSLLDLGEVDAGVISRLY
EECCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHH
AQLNASNYRVKETGIIFSPVVLKFAFTKHKHRDLIITIDKYLKEFKEDPESVYYESLDRW
HHHCCCCEEEEECCEEEHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHH
LNIDVVESTFVIPQWLVVALIVSSIFITIFAGTAFLLQKRVDLKTRELRERNMELEELSK
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
KLKKSEEKFRQLIQSMDDVVFVLDVNKRFVEFYGEWFEKYGLDPEKLVGKKPSAVLDKIN
HHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCC
GESIEKAAEVALESGSATVEWIVKRDDDNKDNKKDEGSKIYLGVSLSALRNGNGKVVGIV
CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHCCCCCCEEEEE
GVARDITEKVKNNEKMRYLSFHDVLTGLYNRAFFEEELKRLDSHRQLPISLIMIDINCLK
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHH
LTNDIFGHLEGDRVIKEVAQALRSSCRKEDIIARWGGDEFVILLPKTPFEEVKEVGERIR
HHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCEEEECCCEEEEEECCCCHHHHHHHHHHHH
RTCRIKIVDDIELNVSQGIATKEKFSQDMMDVLREAEMRMYEEKVALDVQIKKALLRYFR
HHEEEEEEECCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKIAQGQGAVSSVECLEKMKEIAERFGYAVGLDNAEMNKLLLLVEYHDIGIVALKNHSEK
HHHHCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEECCEEEEEEECCCCC
GLNYEKHPEVGYKIALNFPEIAPIAEYILYHHERWDGQGYPKKLRGNEIPLLSRLVSILD
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHH
FYAKEKCKDGEPKQSDERIILELGKRAGSEFDPDLVKLFTKLLLL
HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]