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The map label for this gene is ygaF [H]

Identifier: 239617628

GI number: 239617628

Start: 1324683

End: 1325159

Strand: Direct

Name: ygaF [H]

Synonym: Kole_1249

Alternate gene names: 239617628

Gene position: 1324683-1325159 (Clockwise)

Preceding gene: 239617627

Following gene: 239617629

Centisome position: 57.54

GC content: 39.83

Gene sequence:

>477_bases
ATGGAAAGCAAGGCAATAGTTGGAAAACCTGTTCCAGATTTTACTTTAGAAAATGAGAATGGTGAAAGCGTTACGCTGTC
ATCTTTTCGCGGCAAGTGTGTTGTGTTGTATTTTTATCCCAAAGATAATACACCGGGATGCACACTTGAAGCTCAGGACT
TCAGAGACCATTTAAAGGATTTCGAGGCTCTGAACACCATAGTACTGGGTGTCAGCAAAGACAGCGTCAAATCACACATG
AATTTTGCAAAGAAACTGAATTTGAACTTTCACCTGCTCAGCGACCCAGAGGCAAAGGTACACAAGATCTTCGACGTGCT
TAAACCTAAGAAAAGGTTTGGAAAAGAATATATAGGAACAGAAAGATCCACCTTTGTTATAGACAAAGACGGCATTCTAA
TCAAAGAATATAGAAAGGTAAAAGTAAAGGGGCACGTCCAGGAAGTATTAGAATTCATAAAAAGCAATTGCGGCTGA

Upstream 100 bases:

>100_bases
ATCCGAAACTATTTTATCCAGATATGTTTTCTCAATACCAGAAGAAATAGGCATGTTCAGCTCAGTATTATTCGCAAAGC
GAAGAAAAGGGGGGATGATT

Downstream 100 bases:

>100_bases
AAAGTTGCACCCACTCCGAAGAAGAGCATACCCTCAACGAAGCCGAGCTTACCCACGCGCTAGCGTGCTCACCAGCCGCG
CAGCGGCTTTCTCTGGTCTC

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MESKAIVGKPVPDFTLENENGESVTLSSFRGKCVVLYFYPKDNTPGCTLEAQDFRDHLKDFEALNTIVLGVSKDSVKSHM
NFAKKLNLNFHLLSDPEAKVHKIFDVLKPKKRFGKEYIGTERSTFVIDKDGILIKEYRKVKVKGHVQEVLEFIKSNCG

Sequences:

>Translated_158_residues
MESKAIVGKPVPDFTLENENGESVTLSSFRGKCVVLYFYPKDNTPGCTLEAQDFRDHLKDFEALNTIVLGVSKDSVKSHM
NFAKKLNLNFHLLSDPEAKVHKIFDVLKPKKRFGKEYIGTERSTFVIDKDGILIKEYRKVKVKGHVQEVLEFIKSNCG
>Mature_158_residues
MESKAIVGKPVPDFTLENENGESVTLSSFRGKCVVLYFYPKDNTPGCTLEAQDFRDHLKDFEALNTIVLGVSKDSVKSHM
NFAKKLNLNFHLLSDPEAKVHKIFDVLKPKKRFGKEYIGTERSTFVIDKDGILIKEYRKVKVKGHVQEVLEFIKSNCG

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI4505591, Length=163, Percent_Identity=31.2883435582822, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI32455266, Length=163, Percent_Identity=31.2883435582822, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI32455264, Length=163, Percent_Identity=31.2883435582822, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=38.4105960264901, Blast_Score=108, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193204376, Length=116, Percent_Identity=39.6551724137931, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI32565831, Length=116, Percent_Identity=39.6551724137931, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322180, Length=153, Percent_Identity=36.6013071895425, Blast_Score=83, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17738015, Length=161, Percent_Identity=37.888198757764, Blast_Score=80, Evalue=7e-16,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17953; Mature: 17953

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKAIVGKPVPDFTLENENGESVTLSSFRGKCVVLYFYPKDNTPGCTLEAQDFRDHLKD
CCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHH
FEALNTIVLGVSKDSVKSHMNFAKKLNLNFHLLSDPEAKVHKIFDVLKPKKRFGKEYIGT
HHHHHHHEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHCHHHHCC
ERSTFVIDKDGILIKEYRKVKVKGHVQEVLEFIKSNCG
CCCEEEECCCCEEEEHHHEEEECHHHHHHHHHHHHCCC
>Mature Secondary Structure
MESKAIVGKPVPDFTLENENGESVTLSSFRGKCVVLYFYPKDNTPGCTLEAQDFRDHLKD
CCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEHHHHHHHHHH
FEALNTIVLGVSKDSVKSHMNFAKKLNLNFHLLSDPEAKVHKIFDVLKPKKRFGKEYIGT
HHHHHHHEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHCHHHHCC
ERSTFVIDKDGILIKEYRKVKVKGHVQEVLEFIKSNCG
CCCEEEECCCCEEEEHHHEEEECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]