Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 239617493

GI number: 239617493

Start: 1177750

End: 1178487

Strand: Direct

Name: yibD [C]

Synonym: Kole_1109

Alternate gene names: 239617493

Gene position: 1177750-1178487 (Clockwise)

Preceding gene: 239617492

Following gene: 239617494

Centisome position: 51.16

GC content: 39.16

Gene sequence:

>738_bases
ATGGCTCCATTGATTACGATAATCGTACCGGTCTTCAACGAAGAATTCTTTTTGGAAGATACATTGAGATCAATTCGGGC
ACAAAGCTTCAAAAATTACGAGCTCATCGTTGTTGACAATGGCAGTACCGACAAAAGTCCTGAGATTGCGAAAAAGTACG
CTGATAAGGTGGTATTTGAAGAGCGAAAAGGCTCTATCTATGCAATGCATAAGGGATTCGAAATGGCGGCTGGAGATATA
ATAACCAGCTGTGATGCTGATACGCTTTATCCAAATAATTGGTTGGCAAAAATGGTTCAAGCCTTTCAAAAAGACAAAGT
TGTGGCAGTATACGGCCCCATGGCTTTTAGAGAGAATGGACCGGTTTTAAGAAGGCTTACTGTATTCAGTTACTGTTTGC
TTAATGGACTTTCAAATCTCGCAGGTGTAAGTTTGTCAGGTGCGGCAAATCTTGGGATTAGAAAAGATGCGTATTTTGCT
GTTGGCGGTTACAAATTGAATAGCAAAGTCGCTTCCCAGGATTTTATTCTTGTAAAAAAACTCAAAAAAATAGGCAAAGT
CAAATTTTGTCCTTCTATGATATGTTACACTTCGAATCGGCGCTATACAAAGGTAAACTTCATGCACGGGCTCAAAGAAG
CCTTTAGGTTATGGCTTGATGTGGCTCTCAACAGAAACAAGATTACCTATGACAATTATTATGATGAAGATTACTACAAG
AAAAAGGAGAAACGATGA

Upstream 100 bases:

>100_bases
GGTTTCTTTTGTCAGGTCTTTTGAAAAGAAATCTACGTGGTATAAGGTCAAGCGAGAAAAGATATGAAGGCCATGGGTTT
ACTTAAGGGTGTGTGAAAAA

Downstream 100 bases:

>100_bases
AAAAGAAGAACTCTTCCTTGCCCATTAGAGGAATGTTCGCTGGTATTGCTATAAGCATCATTATATTACTGGTTATACAA
AAGATTTTTGGAGCCAAAAT

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAPLITIIVPVFNEEFFLEDTLRSIRAQSFKNYELIVVDNGSTDKSPEIAKKYADKVVFEERKGSIYAMHKGFEMAAGDI
ITSCDADTLYPNNWLAKMVQAFQKDKVVAVYGPMAFRENGPVLRRLTVFSYCLLNGLSNLAGVSLSGAANLGIRKDAYFA
VGGYKLNSKVASQDFILVKKLKKIGKVKFCPSMICYTSNRRYTKVNFMHGLKEAFRLWLDVALNRNKITYDNYYDEDYYK
KKEKR

Sequences:

>Translated_245_residues
MAPLITIIVPVFNEEFFLEDTLRSIRAQSFKNYELIVVDNGSTDKSPEIAKKYADKVVFEERKGSIYAMHKGFEMAAGDI
ITSCDADTLYPNNWLAKMVQAFQKDKVVAVYGPMAFRENGPVLRRLTVFSYCLLNGLSNLAGVSLSGAANLGIRKDAYFA
VGGYKLNSKVASQDFILVKKLKKIGKVKFCPSMICYTSNRRYTKVNFMHGLKEAFRLWLDVALNRNKITYDNYYDEDYYK
KKEKR
>Mature_244_residues
APLITIIVPVFNEEFFLEDTLRSIRAQSFKNYELIVVDNGSTDKSPEIAKKYADKVVFEERKGSIYAMHKGFEMAAGDII
TSCDADTLYPNNWLAKMVQAFQKDKVVAVYGPMAFRENGPVLRRLTVFSYCLLNGLSNLAGVSLSGAANLGIRKDAYFAV
GGYKLNSKVASQDFILVKKLKKIGKVKFCPSMICYTSNRRYTKVNFMHGLKEAFRLWLDVALNRNKITYDNYYDEDYYKK
KEKR

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=129, Percent_Identity=28.6821705426357, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787259, Length=142, Percent_Identity=29.5774647887324, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 27969; Mature: 27838

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLITIIVPVFNEEFFLEDTLRSIRAQSFKNYELIVVDNGSTDKSPEIAKKYADKVVFE
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
ERKGSIYAMHKGFEMAAGDIITSCDADTLYPNNWLAKMVQAFQKDKVVAVYGPMAFRENG
HCCCCEEEEECCCHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCC
PVLRRLTVFSYCLLNGLSNLAGVSLSGAANLGIRKDAYFAVGGYKLNSKVASQDFILVKK
CHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCEEECCHHCCCHHHHHHH
LKKIGKVKFCPSMICYTSNRRYTKVNFMHGLKEAFRLWLDVALNRNKITYDNYYDEDYYK
HHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
KKEKR
HHCCC
>Mature Secondary Structure 
APLITIIVPVFNEEFFLEDTLRSIRAQSFKNYELIVVDNGSTDKSPEIAKKYADKVVFE
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
ERKGSIYAMHKGFEMAAGDIITSCDADTLYPNNWLAKMVQAFQKDKVVAVYGPMAFRENG
HCCCCEEEEECCCHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCC
PVLRRLTVFSYCLLNGLSNLAGVSLSGAANLGIRKDAYFAVGGYKLNSKVASQDFILVKK
CHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEECCEEECCHHCCCHHHHHHH
LKKIGKVKFCPSMICYTSNRRYTKVNFMHGLKEAFRLWLDVALNRNKITYDNYYDEDYYK
HHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
KKEKR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]