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The map label for this gene is fucR [H]

Identifier: 239617459

GI number: 239617459

Start: 1142914

End: 1143723

Strand: Reverse

Name: fucR [H]

Synonym: Kole_1074

Alternate gene names: 239617459

Gene position: 1143723-1142914 (Counterclockwise)

Preceding gene: 239617460

Following gene: 239617458

Centisome position: 49.68

GC content: 36.17

Gene sequence:

>810_bases
ATGTGTTTTGGAAATGATACCTTTCTTTTGGGAGGGATTACTATTCTTTTTGAGGAGAGAAAAAACTACATTATAGAAAA
ATTGAACAAGTATGGAAAGATTTATTCTTCGAGCCTTGCTGAAGAGTTGGGCGTTTCCGAGGTCACCATAAGAACAGACC
TAAAAAAACTCGAGCAACAAGGACTTCTGAAAAGAGTACATGGTGGTGCAATCAGTTTACGTCCACAGAGATACGATCCC
CAATTTCAAGAACAGATAGCTGTTGATGTAGATGAAAAAAAGTTGATAGCAAAAAAAACAGTTGCTCTTGTTGAGAAAAA
TGACGTTATTTTCGTTGATTCCGGAAGTACAACGCTTTTCTTTATTGAAGAACTTCTTAAGACTCCACCGATAAATCTAA
CGATCGTAACGAATTCTCTTTATGTAATAAACACCGTTGTTCAGCATCCTGAAGTTAAGCTCGTGGTTTTAGGGGGATAC
TTTCAGTACAGTACGATGAACTTTTTGGATCTCGAGATTAACCCCTTCTTTGACAGATATCACGTAAATAAAGCTTTTAT
GGGTGTCAATGGAATAGATGAAATAGGCTATTATTCTTCTACACTTTTGGAGGCAGAAACAAAGAAGACGATTATGCAGA
CAAGCCCCATGATTTACATCCTGGCAAGTTCATCAAAGATCTTCAAAAAATCGCTGGTTCTTATAAACCAATGGCAAGGA
AAAGAATTTGTCATTACTGGTACAAAAGACGAAAGTCACATAAAAAAACTCAAGAAATGTGAAGAAGAAGGAAAATTCCA
TGTTCTATAA

Upstream 100 bases:

>100_bases
GAAACTAATCGTAAAAAAACGAAAGCAAACGAAAATACAACCTTCTATCGAGAATAATCTTTCGTAATGCTCTATAAAGC
CATATAATTGAGTTTTGAAA

Downstream 100 bases:

>100_bases
TTCCTGATCCCTTTGAGGGGATCAATAGGAGGGATTTGTGTGAAAAAAGTTTCCGTGGTTCTTTTAATGTTGTTGATTTT
CACTCTTTCAATTACGGTTT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MCFGNDTFLLGGITILFEERKNYIIEKLNKYGKIYSSSLAEELGVSEVTIRTDLKKLEQQGLLKRVHGGAISLRPQRYDP
QFQEQIAVDVDEKKLIAKKTVALVEKNDVIFVDSGSTTLFFIEELLKTPPINLTIVTNSLYVINTVVQHPEVKLVVLGGY
FQYSTMNFLDLEINPFFDRYHVNKAFMGVNGIDEIGYYSSTLLEAETKKTIMQTSPMIYILASSSKIFKKSLVLINQWQG
KEFVITGTKDESHIKKLKKCEEEGKFHVL

Sequences:

>Translated_269_residues
MCFGNDTFLLGGITILFEERKNYIIEKLNKYGKIYSSSLAEELGVSEVTIRTDLKKLEQQGLLKRVHGGAISLRPQRYDP
QFQEQIAVDVDEKKLIAKKTVALVEKNDVIFVDSGSTTLFFIEELLKTPPINLTIVTNSLYVINTVVQHPEVKLVVLGGY
FQYSTMNFLDLEINPFFDRYHVNKAFMGVNGIDEIGYYSSTLLEAETKKTIMQTSPMIYILASSSKIFKKSLVLINQWQG
KEFVITGTKDESHIKKLKKCEEEGKFHVL
>Mature_269_residues
MCFGNDTFLLGGITILFEERKNYIIEKLNKYGKIYSSSLAEELGVSEVTIRTDLKKLEQQGLLKRVHGGAISLRPQRYDP
QFQEQIAVDVDEKKLIAKKTVALVEKNDVIFVDSGSTTLFFIEELLKTPPINLTIVTNSLYVINTVVQHPEVKLVVLGGY
FQYSTMNFLDLEINPFFDRYHVNKAFMGVNGIDEIGYYSSTLLEAETKKTIMQTSPMIYILASSSKIFKKSLVLINQWQG
KEFVITGTKDESHIKKLKKCEEEGKFHVL

Specific function: Transcriptional activator of the fuc operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=231, Percent_Identity=30.3030303030303, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789059, Length=230, Percent_Identity=29.5652173913043, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1789829, Length=220, Percent_Identity=29.0909090909091, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788069, Length=218, Percent_Identity=31.651376146789, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787540, Length=208, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790635, Length=252, Percent_Identity=26.5873015873016, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI226510968, Length=208, Percent_Identity=25, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789170, Length=215, Percent_Identity=25.5813953488372, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082344, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787063, Length=176, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30636; Mature: 30636

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFGNDTFLLGGITILFEERKNYIIEKLNKYGKIYSSSLAEELGVSEVTIRTDLKKLEQQ
CCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
GLLKRVHGGAISLRPQRYDPQFQEQIAVDVDEKKLIAKKTVALVEKNDVIFVDSGSTTLF
HHHHHHCCCEEEECCCCCCCHHHHHEEECCCHHHHHHHHHHEEEECCCEEEEECCCCEEH
FIEELLKTPPINLTIVTNSLYVINTVVQHPEVKLVVLGGYFQYSTMNFLDLEINPFFDRY
HHHHHHCCCCCEEEEEECCEEEEEHHHCCCCEEEEEEECEEEECCCEEEEEEECCCHHHE
HVNKAFMGVNGIDEIGYYSSTLLEAETKKTIMQTSPMIYILASSSKIFKKSLVLINQWQG
ECCHHEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHEEEEEECCC
KEFVITGTKDESHIKKLKKCEEEGKFHVL
CEEEEECCCCHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MCFGNDTFLLGGITILFEERKNYIIEKLNKYGKIYSSSLAEELGVSEVTIRTDLKKLEQQ
CCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
GLLKRVHGGAISLRPQRYDPQFQEQIAVDVDEKKLIAKKTVALVEKNDVIFVDSGSTTLF
HHHHHHCCCEEEECCCCCCCHHHHHEEECCCHHHHHHHHHHEEEECCCEEEEECCCCEEH
FIEELLKTPPINLTIVTNSLYVINTVVQHPEVKLVVLGGYFQYSTMNFLDLEINPFFDRY
HHHHHHCCCCCEEEEEECCEEEEEHHHCCCCEEEEEEECEEEECCCEEEEEEECCCHHHE
HVNKAFMGVNGIDEIGYYSSTLLEAETKKTIMQTSPMIYILASSSKIFKKSLVLINQWQG
ECCHHEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHEEEEEECCC
KEFVITGTKDESHIKKLKKCEEEGKFHVL
CEEEEECCCCHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]