BacMap

Definition	Kosmotoga olearia TBF 19.5.1, complete genome.
Accession	NC_012785
Length	2,302,126

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The map label for this gene is ydfG [C]

Identifier: 239617451

GI number: 239617451

Start: 1134446

End: 1135216

Strand: Reverse

Name: ydfG [C]

Synonym: Kole_1066

Alternate gene names: 239617451

Gene position: 1135216-1134446 (Counterclockwise)

Preceding gene: 239617454

Following gene: 239617449

Centisome position: 49.31

GC content: 42.15

Gene sequence:

>771_bases
ATGGTCAATAATGATCGACAGGTAGTCATCATTACCGATGCAAATAACGGAATAGGATTTCATATGGCCTCAGCTTTATT
GGATGAGGGGTATCGGGTTGCTGCATTCGATCTCGCAGGAGATAATCTCGAAGAATTACAGAAATCCTTCCCGGATAATC
TACTTTTTTGCAAGACTGACGTCACTCAGGACCCGGAAGTCAGAGAATCGGTTGAGAAAGTTATCCAAAAATGGGGTCAG
ATTGATATTCTTGTCAACAATGCCTGTTTGGCTATCTTTGCGCCTTTTGAAATGAAAGATATTGAAGACACCAGGCGAGA
ATTTGAAGTGAATTATTTCGGTTACGTTCGAATGATCAATGCCGTTTTGCCTTACATGAAAGCAAGAAGAAAAGGAATCA
TTCATAACGTTAGTTCAGGGGTTGGGATAACGGGCTTTCCGGGAATCTACGGATATTCTTCCACAAAAGGAGCCATTGAA
GCATTAACACTAACCCTATCGTATGAATTTGCCCGATACGGTATCAGCGTTACGGTCATGCATCCACCTTTAACAAACAC
CAAATCAGCATCACCACTCGGAATTCCCTCACAAGTAATGGCTGATCCGGCAGATGTCGGACGTGCGCTTGCTAAGAAAG
TTCTATCCACCAAATGGGTGATAACACCAAATCTTCAAACGCGCATTTATCTGTTCATAGCACGCAGATTTCCTCATGCG
ATTGGTAAACTAATGGGAAAAATGACCGAAAGAGAAAAGAGGAAAAGTTAA

Upstream 100 bases:

>100_bases
GAGCACCATTTTCCTAAATGAGATGAATTTGTTTATAATAATATCCCAACGGAAAAAACGGAAATTTAAGCCTCAGCGTT
CTAAAGGGGTGTCAAGAAAG

Downstream 100 bases:

>100_bases
GCGTGTGACAAAGATATTCTGCGTTTTCAAACTTTCATTTTTTGCGTTTTGCAAAATATTCCGAGTTTCTTGATTTCTGA
ATCTCGGGTATCTAGTCTCT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MVNNDRQVVIITDANNGIGFHMASALLDEGYRVAAFDLAGDNLEELQKSFPDNLLFCKTDVTQDPEVRESVEKVIQKWGQ
IDILVNNACLAIFAPFEMKDIEDTRREFEVNYFGYVRMINAVLPYMKARRKGIIHNVSSGVGITGFPGIYGYSSTKGAIE
ALTLTLSYEFARYGISVTVMHPPLTNTKSASPLGIPSQVMADPADVGRALAKKVLSTKWVITPNLQTRIYLFIARRFPHA
IGKLMGKMTEREKRKS

Sequences:

>Translated_256_residues
MVNNDRQVVIITDANNGIGFHMASALLDEGYRVAAFDLAGDNLEELQKSFPDNLLFCKTDVTQDPEVRESVEKVIQKWGQ
IDILVNNACLAIFAPFEMKDIEDTRREFEVNYFGYVRMINAVLPYMKARRKGIIHNVSSGVGITGFPGIYGYSSTKGAIE
ALTLTLSYEFARYGISVTVMHPPLTNTKSASPLGIPSQVMADPADVGRALAKKVLSTKWVITPNLQTRIYLFIARRFPHA
IGKLMGKMTEREKRKS
>Mature_256_residues
MVNNDRQVVIITDANNGIGFHMASALLDEGYRVAAFDLAGDNLEELQKSFPDNLLFCKTDVTQDPEVRESVEKVIQKWGQ
IDILVNNACLAIFAPFEMKDIEDTRREFEVNYFGYVRMINAVLPYMKARRKGIIHNVSSGVGITGFPGIYGYSSTKGAIE
ALTLTLSYEFARYGISVTVMHPPLTNTKSASPLGIPSQVMADPADVGRALAKKVLSTKWVITPNLQTRIYLFIARRFPHA
IGKLMGKMTEREKRKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=187, Percent_Identity=32.0855614973262, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=271, Percent_Identity=28.0442804428044, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7657478, Length=183, Percent_Identity=29.5081967213115, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4758504, Length=192, Percent_Identity=28.6458333333333, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI83715985, Length=216, Percent_Identity=28.2407407407407, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI44680136, Length=207, Percent_Identity=31.4009661835749, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI44680133, Length=207, Percent_Identity=31.4009661835749, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI17738292, Length=207, Percent_Identity=31.4009661835749, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI223718074, Length=205, Percent_Identity=30.2439024390244, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI157739938, Length=200, Percent_Identity=28.5, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=204, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40548397, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI214010158, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI214010156, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22758144, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4504503, Length=194, Percent_Identity=26.2886597938144, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI119392083, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI210032110, Length=255, Percent_Identity=23.921568627451, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19743808, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7705855, Length=187, Percent_Identity=26.2032085561497, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI22507405, Length=183, Percent_Identity=26.775956284153, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082100, Length=229, Percent_Identity=30.5676855895196, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786812, Length=179, Percent_Identity=26.8156424581006, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787335, Length=206, Percent_Identity=30.0970873786408, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787905, Length=139, Percent_Identity=31.6546762589928, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790717, Length=188, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788459, Length=184, Percent_Identity=29.3478260869565, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=235, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=190, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=29.064039408867, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=27.8606965174129, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=30.9278350515464, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=203, Percent_Identity=28.0788177339901, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=195, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=190, Percent_Identity=27.8947368421053, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=25.6544502617801, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=30.0518134715026, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=33.1578947368421, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=30.4347826086957, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=29.3193717277487, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=217, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24643142, Length=205, Percent_Identity=31.219512195122, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357041, Length=183, Percent_Identity=28.9617486338798, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=28.1914893617021, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24665243, Length=187, Percent_Identity=33.1550802139037, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221331218, Length=187, Percent_Identity=33.1550802139037, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24665247, Length=188, Percent_Identity=32.9787234042553, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221331216, Length=188, Percent_Identity=32.9787234042553, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649181, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28568; Mature: 28568

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNDRQVVIITDANNGIGFHMASALLDEGYRVAAFDLAGDNLEELQKSFPDNLLFCKTD
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEECC
VTQDPEVRESVEKVIQKWGQIDILVNNACLAIFAPFEMKDIEDTRREFEVNYFGYVRMIN
CCCCCHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCCHHHHHHHEECCHHHHHHHHH
AVLPYMKARRKGIIHNVSSGVGITGFPGIYGYSSTKGAIEALTLTLSYEFARYGISVTVM
HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEHHHCEEEEEE
HPPLTNTKSASPLGIPSQVMADPADVGRALAKKVLSTKWVITPNLQTRIYLFIARRFPHA
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEECCCCCCEEEEEHHHHHHHH
IGKLMGKMTEREKRKS
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVNNDRQVVIITDANNGIGFHMASALLDEGYRVAAFDLAGDNLEELQKSFPDNLLFCKTD
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEECC
VTQDPEVRESVEKVIQKWGQIDILVNNACLAIFAPFEMKDIEDTRREFEVNYFGYVRMIN
CCCCCHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCCHHHHHHHEECCHHHHHHHHH
AVLPYMKARRKGIIHNVSSGVGITGFPGIYGYSSTKGAIEALTLTLSYEFARYGISVTVM
HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEHHHCEEEEEE
HPPLTNTKSASPLGIPSQVMADPADVGRALAKKVLSTKWVITPNLQTRIYLFIARRFPHA
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEECCCCCCEEEEEHHHHHHHH
IGKLMGKMTEREKRKS
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA