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The map label for this gene is ytrP [H]

Identifier: 239617412

GI number: 239617412

Start: 1085028

End: 1086761

Strand: Direct

Name: ytrP [H]

Synonym: Kole_1023

Alternate gene names: 239617412

Gene position: 1085028-1086761 (Clockwise)

Preceding gene: 239617408

Following gene: 239617416

Centisome position: 47.13

GC content: 36.56

Gene sequence:

>1734_bases
ATGATTCGTATATGTGGGGTCGATTGTATGAGATATTTGTTTCCCCTTTTTATAATGGTGGCGGTTTCAGTTCTTATAAC
GACAATTTTTATCATACAAGGGTTCACTTTTAACTTCCAGCTGGAGATAGTCCCTTTGATTGCTTTTTATGTATTTACTG
ATCTATTTAGGATAAAAAAATCAAAGATAAAACTTGTCACCAATTTTGCTGGTGCAGTTCCTATTGTAGTTTTTGGGGCA
CCGTATTTTCTTCCTTTTATTGCATTTTTCTCCAGTTTCTTTAAAAAACACTCTGAAGGGCCTGACTTGATAAAAAGAAA
GCTGTACGGGGCCCTTCACTATTTCGTTATGTACGGAGTTGCCGTATATTTTTCGGATAACGTAAGAAACCCCTACATAG
CTCTGCTGGTGTTTGCAATAGTGGCAAAAGCACTGAACTTTATTATGGGAGATCTGTTGTACGCGTATATTAGAAAAAAA
CAGGTATTTGATTCGGAGCTGTTGAAAGTTAGTGGTATAGAATTTATTTATTTTGTATTTCTCGCGATTTATGGTGGCCT
TATGTGGCGGCTTTATGAACTTGGCCTTGCTTTTGAAACCATTTTAGTTTTCCTTCTTTATCCTGTCATTGTGGGAATCG
TTTGGGTATATGTTCAGTTTTCAAACATCTCTAAAGAACGAAAGAAAAGTATAGAAAGAATAGAGAGTATAAGGGAAAGG
CTTAAAAAGATTTTAGAAATGATTTCAATAGTTCGATCAAATCCGGACTTTGAAGAGGCGTTAAATACAATGGCGCAAAT
AGTAAATGACGCGTTAGGTTACAAATACTGTATTATAAATCTTCTGGATAGAAGGAATAATAAGATAATTCGTGTTGCAC
AATCAGGATTAACAAAAGAAGAGTTCGATAAGCTGAAGTCAAATCCTCCACCGATTGACTATATAATGCAGGTTTTAGAT
GACCAGTTCAAAGTAAGTAGATCGTATTTTATACCTGAAGGTGCTAAAGAGATTGATACCACATATGCTTATGTCGGCGA
TTACGATGAACTTTTGAAATCCGAAGCAGAATGGAAGCCGGGCGATGTATTGATTGTTCCCATAATGAGAAACGAAGAAA
TGGTTGGTTATATATCTGTCGACGCGCCCAAAGATGGAAAAAGGCCTCAGTTTGAAGATATTGAAATGCTCGAAATCATC
GCGGATCAAATATTGAGAGTAATAGAGGATTCAACCAGGTTCAGAGAAATTCTTATGGCTAGTAAGACCGATCTTGCAAC
AGGGCTGTACACCCATACAGAATTTTATTCAGTCTTAGAAAAACTAATAAAATCGAAAGAAAAACGTTTCTCAATCATTA
TGATAGACCTTGACAACTTCAAGGAAATAAATGATACCTATGGGCATGTTGTTGGAGATCAGGTGATAGAAAAGATAGCT
CGGGTTATAAGGAAGAACCTTAGAAAGAAAGATATTGGTGCAAGATACGGTGGAGATGAATTCGCTGTAATCGCTATGGA
TGCTTCAAAAGCAGACGCTATGAATATTGCTAAAAGGATCAGTAAGGAGATAAGAGAAATATCTGTAGGACAGATAAAAA
TGAGAGTAACATGTAGTATGGGGATTGCCTCATATCCTTTCGACGGTGAAAGTGCTTCTGATCTGGTTGAAAAAGCTGAT
AGGGCTTTGTACGCTGCGAAAAAAGCCGGGAAAAATAAAATTTATGCTATCTAA

Upstream 100 bases:

>100_bases
CATTATTACTGCGATTATCAAAAGTATCACCTCCATTATATTAGGATATCAGAAAAAAAGGGAGTTGTTTCAAAATGTAG
TATAATTGTTAAAGGTGGAT

Downstream 100 bases:

>100_bases
GATTCTATTGATTTTGATATCACTCGCTTAAAAACTTCAACAACTTTTGGATCAAAAGATTTTCCTTTCTCACTTTCAAT
GATCCTCAATGCTTCTTTTT

Product: diguanylate cyclase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MIRICGVDCMRYLFPLFIMVAVSVLITTIFIIQGFTFNFQLEIVPLIAFYVFTDLFRIKKSKIKLVTNFAGAVPIVVFGA
PYFLPFIAFFSSFFKKHSEGPDLIKRKLYGALHYFVMYGVAVYFSDNVRNPYIALLVFAIVAKALNFIMGDLLYAYIRKK
QVFDSELLKVSGIEFIYFVFLAIYGGLMWRLYELGLAFETILVFLLYPVIVGIVWVYVQFSNISKERKKSIERIESIRER
LKKILEMISIVRSNPDFEEALNTMAQIVNDALGYKYCIINLLDRRNNKIIRVAQSGLTKEEFDKLKSNPPPIDYIMQVLD
DQFKVSRSYFIPEGAKEIDTTYAYVGDYDELLKSEAEWKPGDVLIVPIMRNEEMVGYISVDAPKDGKRPQFEDIEMLEII
ADQILRVIEDSTRFREILMASKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMIDLDNFKEINDTYGHVVGDQVIEKIA
RVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMNIAKRISKEIREISVGQIKMRVTCSMGIASYPFDGESASDLVEKAD
RALYAAKKAGKNKIYAI

Sequences:

>Translated_577_residues
MIRICGVDCMRYLFPLFIMVAVSVLITTIFIIQGFTFNFQLEIVPLIAFYVFTDLFRIKKSKIKLVTNFAGAVPIVVFGA
PYFLPFIAFFSSFFKKHSEGPDLIKRKLYGALHYFVMYGVAVYFSDNVRNPYIALLVFAIVAKALNFIMGDLLYAYIRKK
QVFDSELLKVSGIEFIYFVFLAIYGGLMWRLYELGLAFETILVFLLYPVIVGIVWVYVQFSNISKERKKSIERIESIRER
LKKILEMISIVRSNPDFEEALNTMAQIVNDALGYKYCIINLLDRRNNKIIRVAQSGLTKEEFDKLKSNPPPIDYIMQVLD
DQFKVSRSYFIPEGAKEIDTTYAYVGDYDELLKSEAEWKPGDVLIVPIMRNEEMVGYISVDAPKDGKRPQFEDIEMLEII
ADQILRVIEDSTRFREILMASKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMIDLDNFKEINDTYGHVVGDQVIEKIA
RVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMNIAKRISKEIREISVGQIKMRVTCSMGIASYPFDGESASDLVEKAD
RALYAAKKAGKNKIYAI
>Mature_577_residues
MIRICGVDCMRYLFPLFIMVAVSVLITTIFIIQGFTFNFQLEIVPLIAFYVFTDLFRIKKSKIKLVTNFAGAVPIVVFGA
PYFLPFIAFFSSFFKKHSEGPDLIKRKLYGALHYFVMYGVAVYFSDNVRNPYIALLVFAIVAKALNFIMGDLLYAYIRKK
QVFDSELLKVSGIEFIYFVFLAIYGGLMWRLYELGLAFETILVFLLYPVIVGIVWVYVQFSNISKERKKSIERIESIRER
LKKILEMISIVRSNPDFEEALNTMAQIVNDALGYKYCIINLLDRRNNKIIRVAQSGLTKEEFDKLKSNPPPIDYIMQVLD
DQFKVSRSYFIPEGAKEIDTTYAYVGDYDELLKSEAEWKPGDVLIVPIMRNEEMVGYISVDAPKDGKRPQFEDIEMLEII
ADQILRVIEDSTRFREILMASKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMIDLDNFKEINDTYGHVVGDQVIEKIA
RVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMNIAKRISKEIREISVGQIKMRVTCSMGIASYPFDGESASDLVEKAD
RALYAAKKAGKNKIYAI

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=142, Percent_Identity=38.7323943661972, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=33.1360946745562, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=156, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87081881, Length=190, Percent_Identity=33.1578947368421, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=32.0224719101124, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=32.7272727272727, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=127, Percent_Identity=35.4330708661417, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=31.3253012048193, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=31.7647058823529, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=29.2993630573248, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=205, Percent_Identity=29.7560975609756, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=31.7365269461078, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 66179; Mature: 66179

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRICGVDCMRYLFPLFIMVAVSVLITTIFIIQGFTFNFQLEIVPLIAFYVFTDLFRIKK
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH
SKIKLVTNFAGAVPIVVFGAPYFLPFIAFFSSFFKKHSEGPDLIKRKLYGALHYFVMYGV
HHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AVYFSDNVRNPYIALLVFAIVAKALNFIMGDLLYAYIRKKQVFDSELLKVSGIEFIYFVF
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LAIYGGLMWRLYELGLAFETILVFLLYPVIVGIVWVYVQFSNISKERKKSIERIESIRER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LKKILEMISIVRSNPDFEEALNTMAQIVNDALGYKYCIINLLDRRNNKIIRVAQSGLTKE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHH
EFDKLKSNPPPIDYIMQVLDDQFKVSRSYFIPEGAKEIDTTYAYVGDYDELLKSEAEWKP
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCC
GDVLIVPIMRNEEMVGYISVDAPKDGKRPQFEDIEMLEIIADQILRVIEDSTRFREILMA
CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMIDLDNFKEINDTYGHVVGDQVIEKIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
RVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMNIAKRISKEIREISVGQIKMRVTCSM
HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
GIASYPFDGESASDLVEKADRALYAAKKAGKNKIYAI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIRICGVDCMRYLFPLFIMVAVSVLITTIFIIQGFTFNFQLEIVPLIAFYVFTDLFRIKK
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH
SKIKLVTNFAGAVPIVVFGAPYFLPFIAFFSSFFKKHSEGPDLIKRKLYGALHYFVMYGV
HHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
AVYFSDNVRNPYIALLVFAIVAKALNFIMGDLLYAYIRKKQVFDSELLKVSGIEFIYFVF
HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LAIYGGLMWRLYELGLAFETILVFLLYPVIVGIVWVYVQFSNISKERKKSIERIESIRER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LKKILEMISIVRSNPDFEEALNTMAQIVNDALGYKYCIINLLDRRNNKIIRVAQSGLTKE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHH
EFDKLKSNPPPIDYIMQVLDDQFKVSRSYFIPEGAKEIDTTYAYVGDYDELLKSEAEWKP
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCC
GDVLIVPIMRNEEMVGYISVDAPKDGKRPQFEDIEMLEIIADQILRVIEDSTRFREILMA
CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMIDLDNFKEINDTYGHVVGDQVIEKIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
RVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMNIAKRISKEIREISVGQIKMRVTCSM
HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
GIASYPFDGESASDLVEKADRALYAAKKAGKNKIYAI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]