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The map label for this gene is deoR [H]

Identifier: 239617331

GI number: 239617331

Start: 994114

End: 995073

Strand: Reverse

Name: deoR [H]

Synonym: Kole_0940

Alternate gene names: 239617331

Gene position: 995073-994114 (Counterclockwise)

Preceding gene: 239617332

Following gene: 239617330

Centisome position: 43.22

GC content: 40.1

Gene sequence:

>960_bases
ATGGATTTAAACGAACTTGCGTATCGTGTTTCGCGGCTTTATTACCTTGATGGTCTAACCCAGCAACAGATTGCCAATCG
CCTTGGTATATCCCGGCCAAAAGTATCGAGGCTTTTAACTTATGCACGGGATGTTGGGATGGTTGAGATAAAGTTGAAAG
CGCCTGACGTTGAGAGTAAGGAGTTTCTCTCGAAATCCCTGAAAGAGCGCTTGAATCTAATGGATGTGATAGTAACAGAG
ACAATTGAGAGGAATGAGGAAGACATTCTAAAAAGGGTTGCAAAAGCCGGTGCTGAGTTTATATCCAGAACGTTGAAGAA
CGGTCAGATTGTAGGCTGGGGTTGGGGAAGAACTATGTTTAGGACTGTGCAATCCTTAAACAGCACAGATTCCCATTTTT
CAAGTTTGTTCATTCCTCTTATTGGGGGAACAGGACAGTCAGTTAAGTATTATCAGGTTAATTCCCTTGTTGAAAAAGCT
GCGGAGATCTTCAAAGCTCAGGTTATGTACCTCAATGCTCCGGCGTTTTTTGCGGATAAGAATACATTTGAGTTATTTCT
TAAAGAAAAACAGGTTTTAAACGTTCTGGAAATGTGGAAAAGATTGGATGTTGCTATCTTCGGTCTTGGAAAGCCCATTC
ATGATTCTGAGATTATAAAGTCCGAAATCGATAGTTCAATGATAATAGATCTCATAAGGGAGAAGGCTGTTGGTGATATC
TTAGCCAGATTTTTCAATAAAAATGGCGAAATCTGCAAGTCTTCACTGAATAAGCTTATCCTCGGCATAAATATAGATGA
TCTTCTAAAAGTGCCTCTGAGAATATGTTTGTGCGGTGGAGAAAAGAAAGTGGATGGAATAATAACAGCTTCTAAGAAAG
GGTATTTTAATGTGCTTGTAACAGATTCCATAACGGCTAATTTTGTCCTTGAGAAGCTGAGAGAGGAGAGAGGGGAATGA

Upstream 100 bases:

>100_bases
CAGGCAGAGGATCCCATGAAATACGTAAAAGAGCTCTCAAAGATCGTACATGGTTAAAAGTGTAATTAGAAAATGATGCG
AGACAAAGGAGTTTAGCGGA

Downstream 100 bases:

>100_bases
AGGCACTCTTCTATTTAGGACCTAAGAAACTTGAGTTGAGGGATATTGAGGAACCAAAGAATGAAGACGGTGTAGTCATC
AAGGTTTTGGAAACAGGCAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MDLNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYARDVGMVEIKLKAPDVESKEFLSKSLKERLNLMDVIVTE
TIERNEEDILKRVAKAGAEFISRTLKNGQIVGWGWGRTMFRTVQSLNSTDSHFSSLFIPLIGGTGQSVKYYQVNSLVEKA
AEIFKAQVMYLNAPAFFADKNTFELFLKEKQVLNVLEMWKRLDVAIFGLGKPIHDSEIIKSEIDSSMIIDLIREKAVGDI
LARFFNKNGEICKSSLNKLILGINIDDLLKVPLRICLCGGEKKVDGIITASKKGYFNVLVTDSITANFVLEKLREERGE

Sequences:

>Translated_319_residues
MDLNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYARDVGMVEIKLKAPDVESKEFLSKSLKERLNLMDVIVTE
TIERNEEDILKRVAKAGAEFISRTLKNGQIVGWGWGRTMFRTVQSLNSTDSHFSSLFIPLIGGTGQSVKYYQVNSLVEKA
AEIFKAQVMYLNAPAFFADKNTFELFLKEKQVLNVLEMWKRLDVAIFGLGKPIHDSEIIKSEIDSSMIIDLIREKAVGDI
LARFFNKNGEICKSSLNKLILGINIDDLLKVPLRICLCGGEKKVDGIITASKKGYFNVLVTDSITANFVLEKLREERGE
>Mature_319_residues
MDLNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYARDVGMVEIKLKAPDVESKEFLSKSLKERLNLMDVIVTE
TIERNEEDILKRVAKAGAEFISRTLKNGQIVGWGWGRTMFRTVQSLNSTDSHFSSLFIPLIGGTGQSVKYYQVNSLVEKA
AEIFKAQVMYLNAPAFFADKNTFELFLKEKQVLNVLEMWKRLDVAIFGLGKPIHDSEIIKSEIDSSMIIDLIREKAVGDI
LARFFNKNGEICKSSLNKLILGINIDDLLKVPLRICLCGGEKKVDGIITASKKGYFNVLVTDSITANFVLEKLREERGE

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=311, Percent_Identity=29.5819935691318, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082414, Length=307, Percent_Identity=25.7328990228013, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36066; Mature: 36066

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYARDVGMVEIKLKAPDVESK
CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHH
EFLSKSLKERLNLMDVIVTETIERNEEDILKRVAKAGAEFISRTLKNGQIVGWGWGRTMF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHH
RTVQSLNSTDSHFSSLFIPLIGGTGQSVKYYQVNSLVEKAAEIFKAQVMYLNAPAFFADK
HHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCEEECCC
NTFELFLKEKQVLNVLEMWKRLDVAIFGLGKPIHDSEIIKSEIDSSMIIDLIREKAVGDI
CHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
LARFFNKNGEICKSSLNKLILGINIDDLLKVPLRICLCGGEKKVDGIITASKKGYFNVLV
HHHHHCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEE
TDSITANFVLEKLREERGE
ECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYARDVGMVEIKLKAPDVESK
CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHH
EFLSKSLKERLNLMDVIVTETIERNEEDILKRVAKAGAEFISRTLKNGQIVGWGWGRTMF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHH
RTVQSLNSTDSHFSSLFIPLIGGTGQSVKYYQVNSLVEKAAEIFKAQVMYLNAPAFFADK
HHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCEEECCC
NTFELFLKEKQVLNVLEMWKRLDVAIFGLGKPIHDSEIIKSEIDSSMIIDLIREKAVGDI
CHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
LARFFNKNGEICKSSLNKLILGINIDDLLKVPLRICLCGGEKKVDGIITASKKGYFNVLV
HHHHHCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEE
TDSITANFVLEKLREERGE
ECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]