Click here to switch to the map view.

The map label for this gene is rpsF [H]

Identifier: 239616722

GI number: 239616722

Start: 338110

End: 338565

Strand: Reverse

Name: rpsF [H]

Synonym: Kole_0315

Alternate gene names: 239616722

Gene position: 338565-338110 (Counterclockwise)

Preceding gene: 239616723

Following gene: 239616721

Centisome position: 14.71

GC content: 41.45

Gene sequence:

>456_bases
ATGTCTGAAAAGCGTATTTATGAAACGATGTTCATCGTTTCACCGGAATTACCTGATGAAGCAAGAGAGGCTATTGCTGA
GAAAGTCAAAAGGTACATCGAAGAACGTGTTGAGGGAACTATTGAGCAATTTGACAGATGGGGCATGAGAAAACTTGCTT
ACCGTGTTAGAAAAGGGTTTACGGAAGGAGATTATACTGTTGTACTTTTCCGTGCAGATCCCGAAAAAGTTAACTCTCTG
GAAAGGCTCTACAATATAACGCCAGAGATATTCAGATGGCAGACATTTAGAAGAGAAGACCTTGAGAAAGAAGAGAAAAA
AGCTCGAAAAAAGGCAGCGGAAGCCGTTGTAACTGAGGTTATTGAAACTCCTCAGGCTGAAGAACAGAATGAAAAATCTG
GGGTTTCCAGTGAAATTTCCCAGAAAACAACAACGGAACCCTCTGTGGAGGAGTAA

Upstream 100 bases:

>100_bases
AAATTTCCATTGTCTGGGTTTTACTGTGTTATAATCTTTTTGCGTCAAAATCCCGCTTTGCCAAAAGGCAAGGCCATAAG
TCCATGGGAGGAGGTAACGT

Downstream 100 bases:

>100_bases
TTATGTCTATTAGTTATAACCGTGTGGTGTTGGTCGGGCGTTTGACGCGAGATCCTGAGATACGTTTCAGTGCGAATGGA
ACGCAAGTCTCGGTTTTTAC

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSEKRIYETMFIVSPELPDEAREAIAEKVKRYIEERVEGTIEQFDRWGMRKLAYRVRKGFTEGDYTVVLFRADPEKVNSL
ERLYNITPEIFRWQTFRREDLEKEEKKARKKAAEAVVTEVIETPQAEEQNEKSGVSSEISQKTTTEPSVEE

Sequences:

>Translated_151_residues
MSEKRIYETMFIVSPELPDEAREAIAEKVKRYIEERVEGTIEQFDRWGMRKLAYRVRKGFTEGDYTVVLFRADPEKVNSL
ERLYNITPEIFRWQTFRREDLEKEEKKARKKAAEAVVTEVIETPQAEEQNEKSGVSSEISQKTTTEPSVEE
>Mature_150_residues
SEKRIYETMFIVSPELPDEAREAIAEKVKRYIEERVEGTIEQFDRWGMRKLAYRVRKGFTEGDYTVVLFRADPEKVNSLE
RLYNITPEIFRWQTFRREDLEKEEKKARKKAAEAVVTEVIETPQAEEQNEKSGVSSEISQKTTTEPSVEE

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 17784; Mature: 17653

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKRIYETMFIVSPELPDEAREAIAEKVKRYIEERVEGTIEQFDRWGMRKLAYRVRKGF
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TEGDYTVVLFRADPEKVNSLERLYNITPEIFRWQTFRREDLEKEEKKARKKAAEAVVTEV
CCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IETPQAEEQNEKSGVSSEISQKTTTEPSVEE
HHCCCCCHHHHHCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEKRIYETMFIVSPELPDEAREAIAEKVKRYIEERVEGTIEQFDRWGMRKLAYRVRKGF
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TEGDYTVVLFRADPEKVNSLERLYNITPEIFRWQTFRREDLEKEEKKARKKAAEAVVTEV
CCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IETPQAEEQNEKSGVSSEISQKTTTEPSVEE
HHCCCCCHHHHHCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]