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The map label for this gene is rnz [H]

Identifier: 239616718

GI number: 239616718

Start: 336049

End: 336900

Strand: Reverse

Name: rnz [H]

Synonym: Kole_0311

Alternate gene names: 239616718

Gene position: 336900-336049 (Counterclockwise)

Preceding gene: 239616719

Following gene: 239616717

Centisome position: 14.63

GC content: 39.91

Gene sequence:

>852_bases
TTGGAATTTAAGATTTTTTCCAAGGCGCTCTACTCTACGTGGATTTTGTATCGTCCAGAGCGCGTGCTTTTTGATGCCGG
CGAAGGCATTTCGACCATCCTTGGGAACAGTGTTTATGCTATAAAGGAAGTGTTTATAACACACGGACACGTAGACCATA
TTGCCGGTTTGTGGGGGCTCATAAACACACGTAACAATGCTATGGGTGATAGGGAAAAAGCTCTAAAGATAAATTATCCA
AAAAAGAATAGGGCTATCGAGGACTTTTTAAGGTTTATCACTGAAATGAATCCTAAACTTAGATATGAAATGATACTGAA
TCCTATTGAACCCGGCGAGGAAGTTTATTTAAGAACCGCGGGAAATTTTAGGCGTTCCGTGATTCCATTTCCAGTACAAC
ACACAAGTGGTGAGATCAGTTACGGGTATCATGTTCTGGAAGAAAGAAGGAAATTAAAACCTGAATTCAGTCATTTATCG
CCTCAGGAAATATCCGATCTGGTAAAAGAAAAGGGCAGGGATTTTGTTACTCAGACCTACAAAAAGAAGATACTCACAGT
AAGTGGTGATTGTAATGCCTTACCGGTTTCGGTTATAAAAGGTAGCGAGACGTTGATACATGAGTGTACTTTTATAAACG
GAGGAGATCGCAGAGGACAAAACCACGCTGTTCTTTCTGAGATTCTTGATAATGTCCGGGAAGCCAGTGATATCAAGAGG
CTGATATTGTATCATATATCTAGCAGGTACTCCTCAAAAATCAGTGTGTTGAGAAAAAAGTTGCAGGAAGAGTTCGCCGA
AAAAGGAATTAAAATCTATCTTGTTCATCCCGAAAGACTTTTTGTTCTTTGA

Upstream 100 bases:

>100_bases
TATAAAGAACACAGGGGAATATAAGGTAAACCTAAAATTGCCGGGAAACGTCAAGGGGAGTATAATCATAGCAATCGAAA
AAAGCGAGGAGGATTAGGTT

Downstream 100 bases:

>100_bases
GGGGGGAGTATATGGAGTACATTGGTTGGATGATATTGGGTGTGGCATTACTCGTTGTTGAAATTATTACGCCGATCTTT
TTCTTTCTGTGGTTTGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MEFKIFSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGLINTRNNAMGDREKALKINYP
KKNRAIEDFLRFITEMNPKLRYEMILNPIEPGEEVYLRTAGNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLS
PQEISDLVKEKGRDFVTQTYKKKILTVSGDCNALPVSVIKGSETLIHECTFINGGDRRGQNHAVLSEILDNVREASDIKR
LILYHISSRYSSKISVLRKKLQEEFAEKGIKIYLVHPERLFVL

Sequences:

>Translated_283_residues
MEFKIFSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGLINTRNNAMGDREKALKINYP
KKNRAIEDFLRFITEMNPKLRYEMILNPIEPGEEVYLRTAGNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLS
PQEISDLVKEKGRDFVTQTYKKKILTVSGDCNALPVSVIKGSETLIHECTFINGGDRRGQNHAVLSEILDNVREASDIKR
LILYHISSRYSSKISVLRKKLQEEFAEKGIKIYLVHPERLFVL
>Mature_283_residues
MEFKIFSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGLINTRNNAMGDREKALKINYP
KKNRAIEDFLRFITEMNPKLRYEMILNPIEPGEEVYLRTAGNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLS
PQEISDLVKEKGRDFVTQTYKKKILTVSGDCNALPVSVIKGSETLIHECTFINGGDRRGQNHAVLSEILDNVREASDIKR
LILYHISSRYSSKISVLRKKLQEEFAEKGIKIYLVHPERLFVL

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR013471 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 32609; Mature: 32609

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKIFSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGL
CCCHHHHHHHHHHHHEECCCEEEEECCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
INTRNNAMGDREKALKINYPKKNRAIEDFLRFITEMNPKLRYEMILNPIEPGEEVYLRTA
HCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEC
GNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLSPQEISDLVKEKGRDFVTQTY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
KKKILTVSGDCNALPVSVIKGSETLIHECTFINGGDRRGQNHAVLSEILDNVREASDIKR
HHHEEEECCCCCCCCCEEECCCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LILYHISSRYSSKISVLRKKLQEEFAEKGIKIYLVHPERLFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECC
>Mature Secondary Structure
MEFKIFSKALYSTWILYRPERVLFDAGEGISTILGNSVYAIKEVFITHGHVDHIAGLWGL
CCCHHHHHHHHHHHHEECCCEEEEECCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
INTRNNAMGDREKALKINYPKKNRAIEDFLRFITEMNPKLRYEMILNPIEPGEEVYLRTA
HCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEC
GNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHLSPQEISDLVKEKGRDFVTQTY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
KKKILTVSGDCNALPVSVIKGSETLIHECTFINGGDRRGQNHAVLSEILDNVREASDIKR
HHHEEEECCCCCCCCCEEECCCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LILYHISSRYSSKISVLRKKLQEEFAEKGIKIYLVHPERLFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]