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The map label for this gene is cspA [H]

Identifier: 239616519

GI number: 239616519

Start: 124769

End: 124969

Strand: Reverse

Name: cspA [H]

Synonym: Kole_0109

Alternate gene names: 239616519

Gene position: 124969-124769 (Counterclockwise)

Preceding gene: 239616523

Following gene: 239616518

Centisome position: 5.43

GC content: 40.3

Gene sequence:

>201_bases
ATGAAAGGAACAGTTAAGTGGTTTAATGCTCAGAAGGGCTACGGATTCATTACCAGAGACGAAGGAGAGGACGTTTTTAT
CCATTTTTCAGGGATTGTCTCAGATGGATTTAAAACACTTGAAGAAGGCCAAAGAGTGGAATTTGACATTGAAAACGGTC
AGAAGGGTGCTCAGGCAGTAAACGTTAAAACAGTCGAATAA

Upstream 100 bases:

>100_bases
GTGATAGACATAATAAAAGCGTCGAAATAGGGTACAATTTCTATATCCGAAAGGATAATTCGCTACTTGCAAATGGTGCA
AGAGATTTTCAGGAGGAAAC

Downstream 100 bases:

>100_bases
TTCTAATAAACCTGAAAAAGGCCTACGAGATGGTAGGCCTTTTTTATTGGGACTTATAGAAACTGAGATGGCGAAGCCCA
TAAGACATATTCGAAGAATC

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MKGTVKWFNAQKGYGFITRDEGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKGAQAVNVKTVE

Sequences:

>Translated_66_residues
MKGTVKWFNAQKGYGFITRDEGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKGAQAVNVKTVE
>Mature_66_residues
MKGTVKWFNAQKGYGFITRDEGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKGAQAVNVKTVE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=49.2307692307692, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=49.2307692307692, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=49.2307692307692, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=65, Percent_Identity=49.2307692307692, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=65.0793650793651, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=60.6060606060606, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=60.6060606060606, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=63.4920634920635, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=58.7301587301587, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=53.030303030303, Blast_Score=72, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7384; Mature: 7384

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGTVKWFNAQKGYGFITRDEGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKGAQAV
CCCCEEEEECCCCCEEEECCCCCEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCEEE
NVKTVE
EEEECC
>Mature Secondary Structure
MKGTVKWFNAQKGYGFITRDEGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKGAQAV
CCCCEEEEECCCCCEEEECCCCCEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCEEE
NVKTVE
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]