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The map label for this gene is rbsR [H]

Identifier: 238926025

GI number: 238926025

Start: 3425142

End: 3426095

Strand: Reverse

Name: rbsR [H]

Synonym: EUBREC_3683

Alternate gene names: 238926025

Gene position: 3426095-3425142 (Counterclockwise)

Preceding gene: 238926026

Following gene: 238926024

Centisome position: 99.32

GC content: 38.99

Gene sequence:

>954_bases
ATGGCAAGCATTCGAGAAGTTGCAAAGCTGGCACATGTAGCACCCAGCACGGTATCCAGAGCGTTAAATGGTAGCGGATA
TGTATCAGAGAAAAGCAAAAACAAAATTAAGAAGGCGGTAGAGGAGCTAGATTATATTCCTAATCAGTGGATCAGAAATC
TGTATAAGAAAAGAACGGGTATTATCGGTGTTATGACACCGGATATTATCCATCCGTATTTTTCAACTCTTTGGAATTAT
CTTGAGGCAGAATTAGATCAATACGGATATAATGTGGTTATTTGTAATACCAGAGGAAATCAGGACAAGGAAAGAGAATA
TCTTGATACATTGGAACGTAATCTGTTCGATGGACTGATTGTAGGATCTGCGTTTCTTTCTGATGAATATTATATGAATA
TTGAGAAACCAATTATCTCACTGGATCGGATTATACCGGGAATCCCGCTGGTGACATCGGATCATCATCAGGGAGGAATT
TTAGCGGGCGAATTGTTTTTGGAAAAAGGCTGTAAAAAAGTGATGTGCTTTAGTGATCCGACCAGGATGGAACTTGCCTC
TGCCGATAGCGCGAGAGCCCTTATCGATGTGATGGAGAAGCATAATAGGGAGGTTATCATTGAATCTTTTCAATGGGAGG
AAGTTATAAACTATCAATTGTGTATGAAACGTACCAGAACATTGTTGGATCAATATCCGGACGTTGATGGAATTATGGCT
TTGGACTTGTGTGCAGCCGCCTTCCTCAAGACAGAAAAAAACAAAAAAATATTGGCTTATGATGGAACTTATGTCACGGA
CTTCAATTACCATTCGATTGATTCAATTGTACAGGATGCGAAGAAGGTTGCAAAGGAAAGTGTGAATATGCTTATTAAAC
TGATCAATGATCAACCACTTAAGAAAAGGGAAGTATTGGTTCCTGTAAAATATAAAAAGGGCGATACTTTGTAG

Upstream 100 bases:

>100_bases
ACTTATCGATTGTCGCAGAAGGTTGTCGGATTTAATTAAGAGGATAAAGGGGAATATAAGGGCAATTCGTTTGCAATTAC
ACAAGTGAGGAGAAGAGATT

Downstream 100 bases:

>100_bases
AATGGAGAGCATTGGCACAAAGGAGTGTGTGAAACTTTTTCTGTAAATAGCTAATAACAGCAAGGTCTTCTATGGTAAAA
TATAAATCATAGGAGGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MASIREVAKLAHVAPSTVSRALNGSGYVSEKSKNKIKKAVEELDYIPNQWIRNLYKKRTGIIGVMTPDIIHPYFSTLWNY
LEAELDQYGYNVVICNTRGNQDKEREYLDTLERNLFDGLIVGSAFLSDEYYMNIEKPIISLDRIIPGIPLVTSDHHQGGI
LAGELFLEKGCKKVMCFSDPTRMELASADSARALIDVMEKHNREVIIESFQWEEVINYQLCMKRTRTLLDQYPDVDGIMA
LDLCAAAFLKTEKNKKILAYDGTYVTDFNYHSIDSIVQDAKKVAKESVNMLIKLINDQPLKKREVLVPVKYKKGDTL

Sequences:

>Translated_317_residues
MASIREVAKLAHVAPSTVSRALNGSGYVSEKSKNKIKKAVEELDYIPNQWIRNLYKKRTGIIGVMTPDIIHPYFSTLWNY
LEAELDQYGYNVVICNTRGNQDKEREYLDTLERNLFDGLIVGSAFLSDEYYMNIEKPIISLDRIIPGIPLVTSDHHQGGI
LAGELFLEKGCKKVMCFSDPTRMELASADSARALIDVMEKHNREVIIESFQWEEVINYQLCMKRTRTLLDQYPDVDGIMA
LDLCAAAFLKTEKNKKILAYDGTYVTDFNYHSIDSIVQDAKKVAKESVNMLIKLINDQPLKKREVLVPVKYKKGDTL
>Mature_316_residues
ASIREVAKLAHVAPSTVSRALNGSGYVSEKSKNKIKKAVEELDYIPNQWIRNLYKKRTGIIGVMTPDIIHPYFSTLWNYL
EAELDQYGYNVVICNTRGNQDKEREYLDTLERNLFDGLIVGSAFLSDEYYMNIEKPIISLDRIIPGIPLVTSDHHQGGIL
AGELFLEKGCKKVMCFSDPTRMELASADSARALIDVMEKHNREVIIESFQWEEVINYQLCMKRTRTLLDQYPDVDGIMAL
DLCAAAFLKTEKNKKILAYDGTYVTDFNYHSIDSIVQDAKKVAKESVNMLIKLINDQPLKKREVLVPVKYKKGDTL

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=346, Percent_Identity=23.9884393063584, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790369, Length=314, Percent_Identity=26.1146496815287, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787948, Length=328, Percent_Identity=25.3048780487805, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788474, Length=189, Percent_Identity=31.7460317460317, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789202, Length=179, Percent_Identity=29.608938547486, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=21.3166144200627, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789068, Length=149, Percent_Identity=34.2281879194631, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786268, Length=348, Percent_Identity=24.7126436781609, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786540, Length=335, Percent_Identity=23.8805970149254, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790715, Length=341, Percent_Identity=22.5806451612903, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787906, Length=180, Percent_Identity=27.2222222222222, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36141; Mature: 36010

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIREVAKLAHVAPSTVSRALNGSGYVSEKSKNKIKKAVEELDYIPNQWIRNLYKKRTG
CCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
IIGVMTPDIIHPYFSTLWNYLEAELDQYGYNVVICNTRGNQDKEREYLDTLERNLFDGLI
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
VGSAFLSDEYYMNIEKPIISLDRIIPGIPLVTSDHHQGGILAGELFLEKGCKKVMCFSDP
HHHHHHCCCCEEECHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCC
TRMELASADSARALIDVMEKHNREVIIESFQWEEVINYQLCMKRTRTLLDQYPDVDGIMA
CHHHHHCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LDLCAAAFLKTEKNKKILAYDGTYVTDFNYHSIDSIVQDAKKVAKESVNMLIKLINDQPL
HHHHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKREVLVPVKYKKGDTL
CCCCEEEEEECCCCCCC
>Mature Secondary Structure 
ASIREVAKLAHVAPSTVSRALNGSGYVSEKSKNKIKKAVEELDYIPNQWIRNLYKKRTG
CCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
IIGVMTPDIIHPYFSTLWNYLEAELDQYGYNVVICNTRGNQDKEREYLDTLERNLFDGLI
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
VGSAFLSDEYYMNIEKPIISLDRIIPGIPLVTSDHHQGGILAGELFLEKGCKKVMCFSDP
HHHHHHCCCCEEECHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCC
TRMELASADSARALIDVMEKHNREVIIESFQWEEVINYQLCMKRTRTLLDQYPDVDGIMA
CHHHHHCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LDLCAAAFLKTEKNKKILAYDGTYVTDFNYHSIDSIVQDAKKVAKESVNMLIKLINDQPL
HHHHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKREVLVPVKYKKGDTL
CCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]