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The map label for this gene is lytT [H]

Identifier: 238926015

GI number: 238926015

Start: 3417692

End: 3418408

Strand: Reverse

Name: lytT [H]

Synonym: EUBREC_3673

Alternate gene names: 238926015

Gene position: 3418408-3417692 (Counterclockwise)

Preceding gene: 238926017

Following gene: 238926014

Centisome position: 99.09

GC content: 35.7

Gene sequence:

>717_bases
ATGAAAAATATGAACATTATTATTTGTGATGACAGGATAGATGACAGAAAAAATTTGTCAGATTTGCTGTCAGACTATGG
TGAAAAAAAGAATTATGAGTTTACTATTACAGAATATGATTCTGGAGAACAGTTATGCGAAGAACAATCGGCTTTGGAAG
CGTGTCAGCTATTATTTCTGGACATCAATATGCAGGGGATGGATGGGCTGAAAACAGCTATGAGGATTAAAGAAAAATAT
CCAAAACTTCCAGTTGTGCTGGTGACGGCATACATGAATTACGCACTGGATGGATATAAGGTGAAAGCAAGCCGTTTTCT
GCTGAAAGATAACCTTGCAGATACTATAGAAGAATGTATGGATGATTTGATAGCAGAAATTAATAAAAACCGTAGGATTC
TCGAATTTCGTTTTGTGGAAGGAACGATAAAACTTTATGCAGATGACATCATTTATATAGAAACAGAGCTTCACAAAAAT
GTATTTTATACAGAAAAAGGGACATTTCAGATTTATAAAAAACTGGATGAACTGGAAAATGAATTCAAGGATATGGGATT
CGTGCGGGCACATCTAAGTTTTCTTGTAAATATGAGGTACATCACAAAAATCAGCGGTTATGTGATGACACTTACCACGG
GAAAAAAGATTCCGGTTCCCAAGGCACGATATGCACAGGTAAAGAGGGAATATATGCTGTATAAGGGAGAAGAATAA

Upstream 100 bases:

>100_bases
TGATGCGGAGAATGATCGAGCGGAAGATTTGTTTGATATAATAAAGAGTGCCAGGTGAGACTTGTATGGTTTACAGGCAT
GAGAGCAATCAAAGACAGGA

Downstream 100 bases:

>100_bases
CATGACATTCTGGGTATTGACATTTATTGCGGAAATGCTGGAAGTAAAAGGAACGCTATACTTTTTTGATACTTTTATGG
AAAAAAGAGATGGCGGATAT

Product: transcriptional regulator, LytR/AlgR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKNMNIIICDDRIDDRKNLSDLLSDYGEKKNYEFTITEYDSGEQLCEEQSALEACQLLFLDINMQGMDGLKTAMRIKEKY
PKLPVVLVTAYMNYALDGYKVKASRFLLKDNLADTIEECMDDLIAEINKNRRILEFRFVEGTIKLYADDIIYIETELHKN
VFYTEKGTFQIYKKLDELENEFKDMGFVRAHLSFLVNMRYITKISGYVMTLTTGKKIPVPKARYAQVKREYMLYKGEE

Sequences:

>Translated_238_residues
MKNMNIIICDDRIDDRKNLSDLLSDYGEKKNYEFTITEYDSGEQLCEEQSALEACQLLFLDINMQGMDGLKTAMRIKEKY
PKLPVVLVTAYMNYALDGYKVKASRFLLKDNLADTIEECMDDLIAEINKNRRILEFRFVEGTIKLYADDIIYIETELHKN
VFYTEKGTFQIYKKLDELENEFKDMGFVRAHLSFLVNMRYITKISGYVMTLTTGKKIPVPKARYAQVKREYMLYKGEE
>Mature_238_residues
MKNMNIIICDDRIDDRKNLSDLLSDYGEKKNYEFTITEYDSGEQLCEEQSALEACQLLFLDINMQGMDGLKTAMRIKEKY
PKLPVVLVTAYMNYALDGYKVKASRFLLKDNLADTIEECMDDLIAEINKNRRILEFRFVEGTIKLYADDIIYIETELHKN
VFYTEKGTFQIYKKLDELENEFKDMGFVRAHLSFLVNMRYITKISGYVMTLTTGKKIPVPKARYAQVKREYMLYKGEE

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27938; Mature: 27938

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMNIIICDDRIDDRKNLSDLLSDYGEKKNYEFTITEYDSGEQLCEEQSALEACQLLFL
CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHE
DINMQGMDGLKTAMRIKEKYPKLPVVLVTAYMNYALDGYKVKASRFLLKDNLADTIEECM
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
DDLIAEINKNRRILEFRFVEGTIKLYADDIIYIETELHKNVFYTEKGTFQIYKKLDELEN
HHHHHHHCCCCEEEEEEEECCEEEEEECCEEEEEEECCCCEEEECCCHHHHHHHHHHHHH
EFKDMGFVRAHLSFLVNMRYITKISGYVMTLTTGKKIPVPKARYAQVKREYMLYKGEE
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCC
>Mature Secondary Structure
MKNMNIIICDDRIDDRKNLSDLLSDYGEKKNYEFTITEYDSGEQLCEEQSALEACQLLFL
CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHE
DINMQGMDGLKTAMRIKEKYPKLPVVLVTAYMNYALDGYKVKASRFLLKDNLADTIEECM
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
DDLIAEINKNRRILEFRFVEGTIKLYADDIIYIETELHKNVFYTEKGTFQIYKKLDELEN
HHHHHHHCCCCEEEEEEEECCEEEEEECCEEEEEEECCCCEEEECCCHHHHHHHHHHHHH
EFKDMGFVRAHLSFLVNMRYITKISGYVMTLTTGKKIPVPKARYAQVKREYMLYKGEE
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]